View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3909_low_6 (Length: 431)
Name: NF3909_low_6
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3909_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 13148130 - 13147737
Alignment:
| Q |
13 |
gagatgaacaaaaggaagaaggaaggtaaaggttgtaataacctgtgatatgctttataatgttcttgaatttcaactgatgaactctgagtttgaaatt |
112 |
Q |
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| T |
13148130 |
gagatgaacaaaaggaagaaggaaggtaaaggttgtaataacctgtgatatgctttataatgttcttgaatttcaactgatgaactctgagtttgaaatt |
13148031 |
T |
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| Q |
113 |
tttccatcaagttcttcaattaatttacaggacagcaagcatatattgcacagtttcgtattctctcaaaatgtgcatgagttacatgaataaactagaa |
212 |
Q |
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| T |
13148030 |
tttccatcaagttcttcaattaatttacaggaaagcaagcatatattgcaaagtttcgtattctctcaaaatgtgcatgagttacatgaataaactagaa |
13147931 |
T |
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| Q |
213 |
tatctcaagatgaatcgagtgagatcggtatgtttttgagaagacaaaaagtaaacaaatttaataaatctcaacaagtcgaaattgagcataatatgga |
312 |
Q |
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| T |
13147930 |
tatctcaagatgaatcgagtgagatcggtatgtttttgagaagacaaaaggtaaataaatttaataaatctcaacaagtcgaaattgagcataatatgga |
13147831 |
T |
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| Q |
313 |
aatcgaattattaagattccttttgcaattgtaatccggaaaatgttgatgaagaaatagcttttcaagaaagtacaaaaacctacctaaaaaa |
406 |
Q |
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| T |
13147830 |
aatcgaattattaagattccttttgcaattgtaatccggaaaatgttgatgaagaaatagctttccaagaaagtacaaaaacctacctcaaaaa |
13147737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 13101373 - 13101309
Alignment:
| Q |
75 |
ttcttgaatttcaactgatgaactctgagtttgaaatttttccatcaagttcttcaattaattta |
139 |
Q |
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| T |
13101373 |
ttcttgaatctcaactgatgaactttgactttgaagtttttcgatcaaataattcaattagttta |
13101309 |
T |
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