View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3909_low_9 (Length: 396)
Name: NF3909_low_9
Description: NF3909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3909_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 170 - 388
Target Start/End: Complemental strand, 16949856 - 16949638
Alignment:
| Q |
170 |
gtaaattcttagttactccctctcttgtttgaccaaattaagtttcaatctttattgaattttgcaccctgcaatgccaggaacaatcatggtttcaggt |
269 |
Q |
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| T |
16949856 |
gtaaattcttagttactccctctcttgtttgaccaaattaagtttcaatctttattgaattttgcaccctgcaatgccaggaacaatcatggtttcaggt |
16949757 |
T |
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| Q |
270 |
actaaattttatttagcatatacaattcaagcatcttaaccacatgttgattttctttttgacttctctatattgatttttattatagtgctggaattca |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16949756 |
actaaattttatttagcatatacaattcaagcatcttaaccacatgttgattttctttttgacttctctatattgatttttattatagtgctggaattca |
16949657 |
T |
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| Q |
370 |
tggatcttccatattcttc |
388 |
Q |
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|||||||||||| |||||| |
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| T |
16949656 |
tggatcttccattttcttc |
16949638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 170 - 388
Target Start/End: Complemental strand, 17020521 - 17020303
Alignment:
| Q |
170 |
gtaaattcttagttactccctctcttgtttgaccaaattaagtttcaatctttattgaattttgcaccctgcaatgccaggaacaatcatggtttcaggt |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17020521 |
gtaaattcttagttactccctctcttgtttgaccaaattaagtttcaatctttattgaattttgcaccctgcaatgccaggaacaatcatggtttcaggt |
17020422 |
T |
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| Q |
270 |
actaaattttatttagcatatacaattcaagcatcttaaccacatgttgattttctttttgacttctctatattgatttttattatagtgctggaattca |
369 |
Q |
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| T |
17020421 |
actaaattttatttagcatatacaattcaagcatcttaaccacatgttgattttctttttgacttctctatattgatttttattatagtgctggaattca |
17020322 |
T |
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| Q |
370 |
tggatcttccatattcttc |
388 |
Q |
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| T |
17020321 |
tggatcttccattttcttc |
17020303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 16950006 - 16949878
Alignment:
| Q |
18 |
agaaggaccacacaatagctggtttcattggattctaaccatatccattcttccctatcccatccaaaatttccatttttccaccacttaaatagaaagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16950006 |
agaaggaccacacaatagctggtttcattggattctaaccatatccattcttccctatcccatccaaaatttccatttttccaccacttaaataaaaagt |
16949907 |
T |
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| Q |
118 |
gtaaaaaatattctatgctagaaagttta |
146 |
Q |
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| T |
16949906 |
gtaaaaaatattctatgctagaaagttta |
16949878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 17020671 - 17020543
Alignment:
| Q |
18 |
agaaggaccacacaatagctggtttcattggattctaaccatatccattcttccctatcccatccaaaatttccatttttccaccacttaaatagaaagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17020671 |
agaaggaccacacaatagctggtttcattggattctaaccatatccattcttccctatcccatccaaaatttccatttttccaccacttaaataaaaagt |
17020572 |
T |
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| Q |
118 |
gtaaaaaatattctatgctagaaagttta |
146 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17020571 |
gtaaaaaatattctatgctagaaagttta |
17020543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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