View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3910_high_1 (Length: 472)
Name: NF3910_high_1
Description: NF3910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3910_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 28 - 450
Target Start/End: Original strand, 5242863 - 5243285
Alignment:
| Q |
28 |
agcttcgagtacttactgatcaagaaagtgacactacatagcataatcaaccaatccaaatttgagaaaaaacaatggcatctaaacaacaaaaccgaca |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5242863 |
agcttcgagtacttactgatcaagaaagtgacactacatagcataatcaaccaatccaaatttgagaaaaaacaatggcatctaaacaacaaaaccgaca |
5242962 |
T |
|
| Q |
128 |
agagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtggcaagagccttgaggctcaggaacatcttgctgaaggttataca |
227 |
Q |
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| T |
5242963 |
agagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtggcaagagccttgaggctcaggaacatcttgctgaaggttataca |
5243062 |
T |
|
| Q |
228 |
ttagtttatgattaatgcatattattatatacttaaaatttgatactaatttttgatgtttaattaaaggaaggagcaagggagggcagacaaggaagga |
327 |
Q |
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| T |
5243063 |
ttagtttatgattaatgcatattattatatacttaaaatttgatactaatttttggtgtttaattaaaggaaggagcaagggagggcagacaaggaagga |
5243162 |
T |
|
| Q |
328 |
gcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtgctgaagaggaaggtattgat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243163 |
gcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtgctgaagaggaaggtattgat |
5243262 |
T |
|
| Q |
428 |
attgatgagtccaagttcaagac |
450 |
Q |
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| T |
5243263 |
attgatgagtccaagttcaagac |
5243285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 308 - 444
Target Start/End: Complemental strand, 25523121 - 25522985
Alignment:
| Q |
308 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatgggacgtaaaggaggactgagcactatggagaagtcaggaggagaacgtg |
407 |
Q |
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||||||||||||||||| ||||| | |||| |||||||||||| || ||||| |||||||||||||| || |||||||| ||||| || | | |||||| |
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| T |
25523121 |
ggagggcagacaaggaaagagcagatggggagagaagggtatcaagaaatgggccgtaaaggaggactcagtactatggataagtctggtgaacaacgtg |
25523022 |
T |
|
| Q |
408 |
ctgaagaggaaggtattgatattgatgagtccaagtt |
444 |
Q |
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||| |||||||| || || |||||||| |||||||| |
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| T |
25523021 |
ctgctgaggaaggaatagacattgatgaatccaagtt |
25522985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 25523391 - 25523273
Alignment:
| Q |
102 |
atggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtggcaagagccttgaggctc |
201 |
Q |
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||||| ||| ||||||||||||| |||| |||||||||| ||||| || || || |||||| ||||||||||||| ||||| ||||| ||||| |||| |
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| T |
25523391 |
atggcgtctcaacaacaaaaccgtgaagaacttgaggagagggcaaggcttggtgaaactgttattcctggtggcacaggtggaaagagtcttgaagctc |
25523292 |
T |
|
| Q |
202 |
aggaacatcttgctgaagg |
220 |
Q |
| |
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| |||| ||||||||||| |
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| T |
25523291 |
aacaacaccttgctgaagg |
25523273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Complemental strand, 25523181 - 25523128
Alignment:
| Q |
308 |
ggagggcagacaaggaaggagcaactagggacagaagggtatcaggagatggga |
361 |
Q |
| |
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|||||||||||||||||| |||| ||||| ||||||| ||||| ||||||||| |
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| T |
25523181 |
ggagggcagacaaggaagcagcagttagggtcagaaggatatcaagagatggga |
25523128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 2954117 - 2954053
Alignment:
| Q |
102 |
atggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgt |
166 |
Q |
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||||||||| |||||||||| |||||||||||||||| ||||||||| | |||||| ||||||| |
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| T |
2954117 |
atggcatctcaacaacaaaagtgacaagagcttgaggaaaaggcaaaggagggagagcctgttgt |
2954053 |
T |
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