View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3910_high_10 (Length: 243)
Name: NF3910_high_10
Description: NF3910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3910_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 42060685 - 42060920
Alignment:
| Q |
8 |
agaatatctcacagtgggtcgtataaaatttcataaagataaatcatgaagacaaatacatgtttgtttgtaggtgtctcaaaaactctatcttcatcgg |
107 |
Q |
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| T |
42060685 |
agaaaatctcgcagtgggtcgtataaaatttcataaagataaatcatgaagacaaatacatgtttgtttgtaggtgtctcaaaaactctatcttcatcgg |
42060784 |
T |
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| Q |
108 |
aatcgtgactcacaaaacagtaaaaataatttggaattacataaaggagaaatatgaaggaaatgaaaggatttaaagcatttgcgtgttgaatttaacg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
42060785 |
aatcgtgactcacaaaacagtaaaaataatttggaattacataaaggagaaatatgaaggagatgaaaggatttaaagcatgagcgtgttgaatttaacg |
42060884 |
T |
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| Q |
208 |
agagagcaagtgacagagagtgaaggagaataagac |
243 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
42060885 |
agagagcaagtaacagagagtgaaggagaataagac |
42060920 |
T |
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