View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3910_high_9 (Length: 245)
Name: NF3910_high_9
Description: NF3910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3910_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 9213623 - 9213856
Alignment:
| Q |
1 |
ttatcgtaagaacccatttcgattacaccgttagttgtcggaatacaaatcaatgtttcaattccatgcacgtgtgcttcattggatctttcacagttat |
100 |
Q |
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| T |
9213623 |
ttatcgtaagaacccatttcgattacaccgttagttgtcggaatacaaatcaatgtttcaattccatgcacgtgtgcttcattggatctttcacagttat |
9213722 |
T |
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| Q |
101 |
agatttgaagttcatgtttactattcaaccaaagaacagaatctaaagcaaaagctttaccaggtaatgaaattgaagaagcattacctatggaaaaaat |
200 |
Q |
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| T |
9213723 |
agatttgcagttcatgtttactattcaaccaaagaacagaatctaaagcaaaagatttaccaggtaatgaaattgaagaagcattacctatggaaaaaat |
9213822 |
T |
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| Q |
201 |
ccgagtcaacgacatcacatagaaccattcagca |
234 |
Q |
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| T |
9213823 |
ccgagtcaacgacatcacatagaaccattcagca |
9213856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 9194398 - 9194171
Alignment:
| Q |
7 |
taagaacccatttcgattacaccgttagttgtcggaatacaaatcaatgtttcaattccatgcacgtgtgcttcattggatctttcacagttatagattt |
106 |
Q |
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| T |
9194398 |
taagaacccatttcgattacaccgttagttgtcggaatacaaatcagtgtttcgattccatgcatgtgtgcttcattggatctctcacaattatagattt |
9194299 |
T |
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| Q |
107 |
gaagttcatgtttactattcaaccaaagaacagaatctaaagcaaaagctttaccaggtaatgaaattgaagaagcattacctatggaaaaaatccgagt |
206 |
Q |
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| T |
9194298 |
gaagttcatgtttactattcaaccaaagaacagaatctaaagcaaaagctttaccaggtaatgaaattgaagaagcattacctatggaaaattttcgagt |
9194199 |
T |
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| Q |
207 |
caacgacatcacatagaaccattcagca |
234 |
Q |
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| T |
9194198 |
taacgacatcacgtagaaccattcagca |
9194171 |
T |
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