View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3910_low_1 (Length: 793)
Name: NF3910_low_1
Description: NF3910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3910_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 611; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 1 - 777
Target Start/End: Complemental strand, 37037253 - 37036498
Alignment:
| Q |
1 |
aaatatcgtttctctttttaagaatgtcaaactttttcattaccaatgcacgattagactaactttctagatactaagttaacatttcccattaaaatat |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
37037253 |
aaatatcgtttctctttttaaaaatgtcaaactttttcattaccaatgcacgattagactaactttcaagatactagtttaacatttcccattaaaatat |
37037154 |
T |
|
| Q |
101 |
aatcttatcctataattaagatagtagtagcatatatagcagtagcacacttctctgttctccaaagaatctcaaatataataatcttgctcttattctt |
200 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37037153 |
aatcttaccctataattaagatagtag---catatatagcagtagcacacttctctgttctccaaagaatctcaaatataataatcttgctcttattctt |
37037057 |
T |
|
| Q |
201 |
ctttgctttctaccatttgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttcaaagagcaatagacctctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37037056 |
ctttgctttctaccatttgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttcaaagagcaatagacctctt |
37036957 |
T |
|
| Q |
301 |
gattctactccttttattttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacacttccatggtttcttgcattctcatgtgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37036956 |
gattctactccttttattttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacaattccatggtttcttgcattctcatgtgaa |
37036857 |
T |
|
| Q |
401 |
tcttggttcacatatacttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctccttcaacggtatgtaatat |
500 |
Q |
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| T |
37036856 |
tcttggttcacatatacttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctccttcaacggtatgcaatat |
37036757 |
T |
|
| Q |
501 |
aaactctcgtgtcacgatatttgatattcttataagttactgtctttactgtgtgtatgtaattgatgcaactcatcaagagttgcagcgacatcaagat |
600 |
Q |
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| T |
37036756 |
aaactctcgcgtcacgatatttgatattcttataagttactgtctttactgtgtgtatgtaatcgatgcaactcatc------------------aagat |
37036675 |
T |
|
| Q |
601 |
tgatatcaaaattaatcttgatgttgcagtttatgccggtcgctgttaacaacatttccatgaagtcatgcaccgattttgtattgctaattcnnnnnnn |
700 |
Q |
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| T |
37036674 |
tgatatcaaaattaatcttgatgttgcagtttatgccggtcgctgttaacaacatttccatgaagtcatgcaccgattttgtattgctaattcttttttc |
37036575 |
T |
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| Q |
701 |
nnnnnnnnnnnnagattacctgagaatgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttga |
777 |
Q |
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| T |
37036574 |
aattttttttttagattacctgagaatgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttga |
37036498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 218 - 535
Target Start/End: Complemental strand, 37046729 - 37046427
Alignment:
| Q |
218 |
tgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttcaaagagcaatagacctcttgattctactccttttat |
317 |
Q |
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|||||||||| |||||||||||||||| ||| || |||||||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||| ||| |
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| T |
37046729 |
tgcagaatggcaaaccaagaaaatctccctctgtatgaaaaaatatggatcaaacgaacatttcaaagagcaatagatatcttgattttactcctcctat |
37046630 |
T |
|
| Q |
318 |
tttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacacttccatggtttcttgcattctcatgtgaatcttggttcacatatac |
417 |
Q |
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| T |
37046629 |
tctctcttctttgttaccgtat---------------caacgtcaccttcacaattccatggtttcttgcattctcatgtgaatcttggttcacatatac |
37046545 |
T |
|
| Q |
418 |
ttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctccttcaacggtatgtaatataaactctcgtgtcacga |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37046544 |
ttggattattcttctcaacaccaaatggagtcctgctgttaacaaaacatatccaaaccgtctccttcaacggtatgtaatataaactctcgcgtcacga |
37046445 |
T |
|
| Q |
518 |
tatttgatattcttataa |
535 |
Q |
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| T |
37046444 |
tatttgatattattataa |
37046427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 726 - 777
Target Start/End: Complemental strand, 37045889 - 37045838
Alignment:
| Q |
726 |
atgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttga |
777 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37045889 |
atgagcttccacgtgtggatttgtttgtgacaacagcagatcctgtacttga |
37045838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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