View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3910_low_6 (Length: 400)
Name: NF3910_low_6
Description: NF3910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3910_low_6 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 103 - 400
Target Start/End: Original strand, 9213338 - 9213635
Alignment:
| Q |
103 |
gttggtgttgctaatggtggacaatattctgaatcagaattttcagaatcaatagaacatgatgaaacaatgttattcatttgttgcaatttttggttca |
202 |
Q |
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| T |
9213338 |
gttggtgttgctaatggtggacaatattctgaatcagaattttcagaatcaatagaacatgatgaaacaatgttattcatttgttgcaatttttggttca |
9213437 |
T |
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| Q |
203 |
ttgttttttgtgtctcatcggtgtcttctccggaaccggagacgataccgatgtcggcgaatgtttggaacatagatttgtcaagtgggtttgtggagat |
302 |
Q |
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| T |
9213438 |
ttgttttttgtgtctcatcggtgtcttctccggaaccggagacgataccgatgtcggcgaatgtttggaacatagatttgtcaagtggatttgtggagat |
9213537 |
T |
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| Q |
303 |
aagatctatttctgagttagattctgacgaggatgtttggaacatagatttagcttggtgtactaggttccaattttgttgtatattatcgtaagaac |
400 |
Q |
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| T |
9213538 |
aagatctatttctgagttagattctgacgaggatgtttggaacatagatttagcttggtgtactaggttccaattttgttggatattatcgtaagaac |
9213635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 278 - 400
Target Start/End: Complemental strand, 9194514 - 9194392
Alignment:
| Q |
278 |
atttgtcaagtgggtttgtggagataagatctatttctgagttagattctgacgaggatgtttggaacatagatttagcttggtgtactaggttccaatt |
377 |
Q |
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||||||||| |||| | |||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
9194514 |
atttgtcaaatggggtggtggaggtaagatctaaatttgagtttgattctgacgaggatgtttggaacatagatttagcttggtgcacgaggttccaatt |
9194415 |
T |
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| Q |
378 |
ttgttgtatattatcgtaagaac |
400 |
Q |
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| T |
9194414 |
ttgttggatattgtcataagaac |
9194392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 9194690 - 9194627
Alignment:
| Q |
108 |
tgttgctaatggtggacaatattctgaatcagaattttcagaatcaatagaacatgatgaaaca |
171 |
Q |
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| T |
9194690 |
tgttgctaacagtggacaatattctgaatcagaatcttcagaatctaaagaacatgatgaaaca |
9194627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9213236 - 9213275
Alignment:
| Q |
1 |
gcttccacatggttcattggtgtttgagttcctgctaatg |
40 |
Q |
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| T |
9213236 |
gcttccacatggttcattggtgtttgagttcctgataatg |
9213275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9194794 - 9194755
Alignment:
| Q |
1 |
gcttccacatggttcattggtgtttgagttcctgctaatg |
40 |
Q |
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| T |
9194794 |
gcttccacatggttcatcggtgtttgagttcctgttaatg |
9194755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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