View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_high_12 (Length: 278)
Name: NF3911_high_12
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_high_12 |
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| [»] scaffold0108 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 12416128 - 12416381
Alignment:
| Q |
16 |
agtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaaaatgttctatattgacaattttgatgcattag |
115 |
Q |
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| T |
12416128 |
agtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaaaatgtactatattgacaattttgatgcattag |
12416227 |
T |
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| Q |
116 |
ctgcaactacaggtaagctaatatttctcgaactacattttaattatatgatatgaataatagaaaggaaattctacaatcatattcactaattcttgct |
215 |
Q |
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| T |
12416228 |
ctgcaactacaggtaagctaatatttctcgaactacattttaattatatgatatgaataatagaaaggaagttctacaatcatattcactaattcttgct |
12416327 |
T |
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| Q |
216 |
cattctttcacaattgtagaatttaatgcagaaggaaatacccttggacctatg |
269 |
Q |
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| T |
12416328 |
cattctttcacaattgtagaatttaatgcagaaggaaatacccttggacctatg |
12416381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 17065 - 17192
Alignment:
| Q |
16 |
agtttagactttatcggagtcaattattatatgtctatctttgctagacatgaatcaaatagaagcaaaatgttctatattgacaattttgatgcattag |
115 |
Q |
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|||||||||||| | ||||||||||||||| ||| | ||||| ||||||||||||||||||||||| |||||| | |||||||||||||||| |||| |
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| T |
17065 |
agtttagactttgtgggagtcaattattattattctgtttttgccagacatgaatcaaatagaagcaatatgttccctcttgacaattttgatgccttag |
17164 |
T |
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| Q |
116 |
ctgcaactacaggtaagctaatatttct |
143 |
Q |
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| T |
17165 |
ctgcaactaatggtaagctaatatttct |
17192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 17241 - 17273
Alignment:
| Q |
221 |
tttcacaattgtagaatttaatgcagaaggaaa |
253 |
Q |
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| T |
17241 |
tttcacaattgtagaatttaatgcagaaggaaa |
17273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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