View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_high_15 (Length: 242)
Name: NF3911_high_15
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3881925 - 3881703
Alignment:
| Q |
1 |
agtaactcattaaacaaaataatgttaggagttttgcccactttttcctctctcttttcagtccccttctatctccattttcctgccaatttctgtgtct |
100 |
Q |
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| T |
3881925 |
agtaactcattaaacaaaataatgttaggagttttgcccactttttcctctctcttttcagtccccttctatctccattttccagccaatttctgcgtct |
3881826 |
T |
|
| Q |
101 |
tcattgttgcagaa-caggaaacgatgaaaaatgaaataaatg-nnnnnnnnnnaaatccaaaaacattaataatataattatttaaacacgagatagac |
198 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3881825 |
tcattgttgcagaagcaggaaacgatgaaaaatgaaataaatgtttttttttttaaatccaaaaacattaataatataagtatttaaacacgagatagac |
3881726 |
T |
|
| Q |
199 |
acaaataagctcttcttaacaac |
221 |
Q |
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|||||||||||||||| |||||| |
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| T |
3881725 |
acaaataagctcttctgaacaac |
3881703 |
T |
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