View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3911_low_1 (Length: 676)

Name: NF3911_low_1
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3911_low_1
NF3911_low_1
[»] chr2 (1 HSPs)
chr2 (6-660)||(37558216-37558870)


Alignment Details
Target: chr2 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 6 - 660
Target Start/End: Original strand, 37558216 - 37558870
Alignment:
Q  6 caaaggtgaaattctgcaggatctttgtccagacccagagaaatactatcattacacggttcctatggaaaggtcaaaaccaaagattccattggagatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37558216 caaaggtgaaattctgcaggatctttgtccagacccagagaaatactatcattacacggttcctatggaaaggtcaaaaccaaagattccattggaggtt 37558315  T
Q  106 cttcttgaagcaacaaaaccagtgaagccgtatccatggtctgaagtaacggatatgagtgttagtgaagctactggatttttctttgatttactagcaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37558316 cttcttgaagcaacaaaaccagtgaagccgtatccatggtctgaagtaacggatatgagtgttagtgaagctactggatttttctttgatttactagcaa 37558415  T
Q  206 taatcctgagtgtgtttaggaaaaaccgaaactgaaatcgtgaatgaaaaggaaatgattgatcaataataaaatgggaaaggaaatgccttcagatatc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37558416 taatcctgagtgtgtttaggaaaaaccgaaactgaaatcgtgaatgaaaaggaaatgattgatcaataataaaatgggaaaggaaatgccttcagatatc 37558515  T
Q  306 tacttcctttgtgttatgaactaggatttcgaactcagcaatgtttgatcactttgctgcaaaaaatatataatcaaaccttccgaagccatgtcaaatt 405  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37558516 tacttcctttgtgttatgaactaggatttcaaactcagcaatgtttgatcactttgctgcaaaaaatatataatcaaaccttccgaagccatgtcaaatt 37558615  T
Q  406 taaggcctgtaaaataatcttactatagcaataataagaacatgtaagttttaaaattggacccaataagaataatgctattgccaataaccatttgcga 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37558616 taaggcctgtaaaataatcttactatagcaataataagaacatgtaagttttaaaattggacccgataagaataatgctattgccaataaccatttgcga 37558715  T
Q  506 attatcatctcacaaaatcaaaatctcttgtatcagccaacaatagaaaatctgcatacaatctaatgaaaatttaaatcagttgtagaaagttctacca 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37558716 attatcatctcacaaaatcaaaatctcttgtatcagccaacaatagaaaatctgcatacaatctactgaaaatttaaatcagttgtagaaagttctacca 37558815  T
Q  606 gaatatcactcgaccctatgatcatttgtgaacaatgtacagaatctctacatat 660  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37558816 gaatatcactcgaccctatgatcatttgtgaacaatgtacagaatctctacatat 37558870  T

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