View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_low_10 (Length: 326)
Name: NF3911_low_10
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 35085035 - 35085312
Alignment:
| Q |
1 |
ttaatgcctttggtatatctgtatcttccaacaacaattcattgcattttatctgcaatttcaaatcatannnnnnnaatttcccttattattgaattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
35085035 |
ttaatgcctttggtatatctgtatcttccaacaacaattcattgcattgtatctgcaatttcaaatcatatttttttaattacccttattattgaattaa |
35085134 |
T |
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| Q |
101 |
ttacaaaaattaataaaacatatatgataatgtccttacattttttctattgcagaagacacgaaatgaatcaaaaagatctctggattcactatccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35085135 |
ttacaaaaattaataaaacatatatgataatgtccttacattttttctattgcagaagacacgaaatgaatcaaaaagatctctggattcactatccatg |
35085234 |
T |
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| Q |
201 |
acatcttcgtcgttggctgcaccatattcattcaaaaactaaaattaataaaatacatttttatggaagaagaattag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35085235 |
acatcttcgtcgttggctgcaccatattcattcaaaaactaaaattaataaaatacatttttatggaagaagaattag |
35085312 |
T |
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