View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_low_11 (Length: 313)
Name: NF3911_low_11
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 49957615 - 49957894
Alignment:
| Q |
15 |
caaaggtaaacaatttccatgtcgggagccacttccaaaggaacaaaaaacatagaataaacaaaacaatccgaaggtcctagtcagctcccaccaaaac |
114 |
Q |
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| T |
49957615 |
caaaggtaaacaatttccaagtcgggagccacttccaaaggaacaaaaaacatagaataaacaaaacaatccgaaggtcatagtcagcttccaccaaaac |
49957714 |
T |
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| Q |
115 |
ccatcaaattagccggttattggataagatacaaagttttgaagnnnnnnnngaacgtaatatgatccatttgttcaacgtttataatctttttctagaa |
214 |
Q |
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| T |
49957715 |
ccatcaaattagccggttattggataagatacaaagttttgaagaaaaaaaagaacgtaatatgatccatttgttcaacgtttataatctttttctagaa |
49957814 |
T |
|
| Q |
215 |
aatcacttcattacatgacttccgcatcaaacacactgcaaaatgccaaaatcaaaggtaaacaatttccaagtcgggag |
294 |
Q |
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| T |
49957815 |
aatcacttcattacatgacttccgcatcaaacacactacaaaatgtcaaaatcaaaggtaaacaattttcaagtcgggag |
49957894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 113 - 294
Target Start/End: Original strand, 49957461 - 49957642
Alignment:
| Q |
113 |
acccatcaaattagccggttattggataagatacaaagttttgaagnnnnnnnngaacgtaatatgatccatttgttcaacgtttataatctttttctag |
212 |
Q |
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| T |
49957461 |
acccatcaaattagtcggttattcgatcggatacaatgttttgaagaagaaaaaaaatgtaatataatccatttactcaacatttataatctttttttag |
49957560 |
T |
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| Q |
213 |
aaaatcacttcattacatgacttccgcatcaaacacactgcaaaatgccaaaatcaaaggtaaacaatttccaagtcgggag |
294 |
Q |
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| T |
49957561 |
aaaataacttcattacatgacttccggatcaaccacactacaaaatgccaaaatcaaaggtaaacaatttccaagtcgggag |
49957642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 49957867 - 49957967
Alignment:
| Q |
15 |
caaaggtaaacaatttccatgtcgggagccacttccaaaggaacaaaaaacatagaataaacaaaacaatccgaaggtcctagtcagctcccaccaaaac |
114 |
Q |
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|||||||||||||||| || |||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
49957867 |
caaaggtaaacaattttcaagtcgggagccacctccaaaggaacaaaaaatatagaataaacaaaacaatctgaaggtcatagtcagctcccaccaaaac |
49957966 |
T |
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| Q |
115 |
c |
115 |
Q |
| |
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|
| T |
49957967 |
c |
49957967 |
T |
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