View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3911_low_14 (Length: 252)

Name: NF3911_low_14
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3911_low_14
NF3911_low_14
[»] chr5 (15 HSPs)
chr5 (24-252)||(10216041-10216269)
chr5 (27-147)||(10209939-10210059)
chr5 (24-147)||(12109600-12109722)
chr5 (39-252)||(9674983-9675206)
chr5 (39-147)||(9660505-9660612)
chr5 (24-144)||(10109061-10109181)
chr5 (24-147)||(10105627-10105749)
chr5 (154-238)||(10108667-10108751)
chr5 (24-147)||(12104759-12104881)
chr5 (154-252)||(10210374-10210476)
chr5 (24-136)||(10212528-10212639)
chr5 (161-252)||(9683004-9683095)
chr5 (50-143)||(13855801-13855895)
chr5 (30-148)||(12107747-12107864)
chr5 (107-147)||(9726907-9726947)
[»] chr4 (2 HSPs)
chr4 (57-149)||(54747193-54747285)
chr4 (57-149)||(54763920-54764012)
[»] chr3 (1 HSPs)
chr3 (71-147)||(46445939-46446015)
[»] chr1 (1 HSPs)
chr1 (39-126)||(45151744-45151831)
[»] chr8 (1 HSPs)
chr8 (94-147)||(31558507-31558560)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 252
Target Start/End: Original strand, 10216041 - 10216269
Alignment:
Q  24 cacatgtttcacctgttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaata 123  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10216041 cacatgtttcacctatttactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaata 10216140  T
Q  124 tctgaaagctagagcattaaacatattcatatgcctttctcatgtttaatatacccctgcttaacaaaatgcagagatttaatttgtcttacatctaaga 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  10216141 tctgaaagctagagcattaaacatattcatatgcctttctcatgtttaatatacccctgcttaacaaaatgcattaatttaatttgtcttacatctaaga 10216240  T
Q  224 ggatacaccacagagcaatttgatacatc 252  Q
    |||||||||||||||||||||||||||||    
T  10216241 ggatacaccacagagcaatttgatacatc 10216269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 10209939 - 10210059
Alignment:
Q  27 atgtttcacctgttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatct 126  Q
    ||||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10209939 atgtttcccctgttcactccttcacacatttatttgaaatgtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaacatct 10210038  T
Q  127 gaaagctagagcattaaacat 147  Q
     ||||||||| ||||||||||    
T  10210039 caaagctagaacattaaacat 10210059  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 12109600 - 12109722
Alignment:
Q  24 cacatgtttcacctgttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaata 123  Q
    ||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  12109600 cacatctttcccctattcactcatccacgcatttatttgaaaggtttaatcttttctcttcaatttcatatgtttaaaatca-tttagttttcttcaata 12109698  T
Q  124 tctgaaagctagagcattaaacat 147  Q
    |||  |||||||| ||||||||||    
T  12109699 tctctaagctagaacattaaacat 12109722  T

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Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 9674983 - 9675206
Alignment:
Q  39 ttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagc 138  Q
    |||| |||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||| |||||| |||||||||  |||||| ||||||||| |    
T  9674983 ttcaatcattcacacatttatttgaaatgtttaatcttttctcttcaatatcatatgtttaaa-tcattt-agttttctttgatatctcaaagctagaac 9675080  T
Q  139 attaaacat----at-----tcatatgcctttctcatgtttaatatacccctg---cttaacaaaatgcagagatttaatttgtcttacatctaagagga 226  Q
    ||||| |||    ||     |||| | ||||||||||||||||||| ||||||   |||||||||||||||||||| ||| ||| |||||| || |||||    
T  9675081 attaaccattcatatgcctatcatgtacctttctcatgtttaatatgcccctgatgcttaacaaaatgcagagattaaatctgttttacatttaggagga 9675180  T
Q  227 tacaccacagagcaatttgatacatc 252  Q
    ||||||||| ||||||||||||||||    
T  9675181 tacaccacatagcaatttgatacatc 9675206  T

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Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 9660505 - 9660612
Alignment:
Q  39 ttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagc 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||  |||||||| |    
T  9660505 ttcactcatccacacatttatttgaaaggtttaatcttttctcttcgatttcatatgtttaaaatca-tttagttttcttcaatatctctaagctagaac 9660603  T
Q  139 attaaacat 147  Q
    |||||||||    
T  9660604 attaaacat 9660612  T

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Target: chr5; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 10109181 - 10109061
Alignment:
Q  24 cacatgtttcacctgttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaata 123  Q
    |||||||||| ||| | ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  10109181 cacatgtttcccctatccactccttcacacatttatttgaaatgtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttctgcaaca 10109082  T
Q  124 tctgaaagctagagcattaaa 144  Q
    ||| ||| ||||| |||||||    
T  10109081 tctcaaaactagaacattaaa 10109061  T

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Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 10105749 - 10105627
Alignment:
Q  24 cacatgtttcacctgttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaata 123  Q
    ||||| |||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||    
T  10105749 cacatctttcccctattcactcatccacatatttatttgaaatgtttaatcttttctcttcaatttcatatgttttaaatca-tatagttttcttcaata 10105651  T
Q  124 tctgaaagctagagcattaaacat 147  Q
    ||| ||||||||| ||||||||||    
T  10105650 tctcaaagctagaacattaaacat 10105627  T

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Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 10108751 - 10108667
Alignment:
Q  154 atgcctttctcatgtttaatatacccctgcttaacaaaatgcagagatttaatttgtcttacatctaagaggatacaccacagag 238  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10108751 atgcctttctcatgtttaatatgcccctgcttaagaaaatgcagagatttaatctgtcttacatctaagaggatacaccacagag 10108667  T

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Target: chr5; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 12104759 - 12104881
Alignment:
Q  24 cacatgtttcacctgttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaata 123  Q
    |||||||||| ||| || |||||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  12104759 cacatgtttcccctatttactcatccacacacctatttgaaatatttaatcttttctcttcaatttcatgtgtttaaaatca-tttagttttctacaata 12104857  T
Q  124 tctgaaagctagagcattaaacat 147  Q
    ||| |||| |||| ||||||||||    
T  12104858 tctcaaagttagaacattaaacat 12104881  T

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Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 10210374 - 10210476
Alignment:
Q  154 atgcctttctcatgtttaatatacccctgcttaacaaaatgcagagatttaatttgtcttacatctaa---gaggatacaccacagagcaa-tttgatac 249  Q
    |||||||||| ||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||   |||||||||||||||||||| ||||||||    
T  10210374 atgcctttctaatgtttaatatacccttgcttaacaaaatgccgagattaaatctgtcttacatctaagaggaggatacaccacagagcaattttgatac 10210473  T
Q  250 atc 252  Q
    |||    
T  10210474 atc 10210476  T

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Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 10212528 - 10212639
Alignment:
Q  24 cacatgtttcacctgttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaata 123  Q
    ||||| |||| ||| ||||||||||||||||||||||  ||||| |||||| ||||||| |||||||||||||||||||||| | ||||||||||||| |    
T  10212528 cacatctttcccctattcactcatccacacatttattcaaaaggattaatcctttctctccaatttcatgtgtttaaaatca-tctagttttcttcaaca 10212626  T
Q  124 tctgaaagctaga 136  Q
    ||| |||||||||    
T  10212627 tctcaaagctaga 10212639  T

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Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 9683004 - 9683095
Alignment:
Q  161 tctcatgtttaatatacccctgcttaacaaaatgcagagatttaatttgtcttacatctaagaggatacaccacagagcaatttgatacatc 252  Q
    ||||||||||||||| ||| || ||||||||||||||||||| ||  | ||||||||||| ||||||| |||||||||||||||||||||||    
T  9683004 tctcatgtttaatatgcccttgattaacaaaatgcagagattaaaactttcttacatctaggaggataaaccacagagcaatttgatacatc 9683095  T

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Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 13855895 - 13855801
Alignment:
Q  50 acacatttatttgaaaggtttaatctttt-ctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagcattaa 143  Q
    |||||||||||||||| |||||||||||| |||||  |||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||    
T  13855895 acacatttatttgaaatgtttaatctttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaa 13855801  T

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Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 12107747 - 12107864
Alignment:
Q  30 tttcacctgttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaa 129  Q
    |||| ||||||||||||| |||||| || | ||||| | ||||| |||||||||||||||||| | |||||||||| |||||||||||||||||||| ||    
T  12107747 tttcccctgttcactcattcacacaattttctgaaatgcttaatattttctcttcaatttcatatatttaaaatca-tttagttttcttcaatatctcaa 12107845  T
Q  130 agctagagcattaaacata 148  Q
    | ||| |  ||||||||||    
T  12107846 atctaaaagattaaacata 12107864  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 9726947 - 9726907
Alignment:
Q  107 tttagttttcttcaatatctgaaagctagagcattaaacat 147  Q
    |||||||||||||||||||| |||||||||  |||||||||    
T  9726947 tttagttttcttcaatatctcaaagctagaatattaaacat 9726907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 54747285 - 54747193
Alignment:
Q  57 tatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagcattaaacatat 149  Q
    |||||| || |||||||||||||||||||||||||| || |||||||| ||||   ||||||||||| || ||||||||| ||||||||||||    
T  54747285 tatttggaatgtttaatcttttctcttcaatttcatatgcttaaaatctttttttatttcttcaatacctcaaagctagaacattaaacatat 54747193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 54764012 - 54763920
Alignment:
Q  57 tatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagcattaaacatat 149  Q
    |||||| || |||||||||||||||||||||||||| || |||||||| ||||   ||||||||||| || ||||||||| ||||||||||||    
T  54764012 tatttggaatgtttaatcttttctcttcaatttcatatgcttaaaatctttttttatttcttcaatacctcaaagctagaacattaaacatat 54763920  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 46446015 - 46445939
Alignment:
Q  71 aatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagcattaaacat 147  Q
    ||||||| ||||||||| ||||  ||||| ||||||||||| |||||||||||||| |||| ||||  |||||||||    
T  46446015 aatctttgctcttcaatctcatacgtttacaatcattttagatttcttcaatatctcaaaggtagaagattaaacat 46445939  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 45151831 - 45151744
Alignment:
Q  39 ttcactcatccacacatttatttgaaaggtttaatcttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatct 126  Q
    ||||||||||||||||  |  ||| || ||||||| ||||||||||| |||||| |||||||||||| ||||| |||| ||| |||||    
T  45151831 ttcactcatccacacacctgattggaatgtttaatattttctcttcactttcatatgtttaaaatcactttagctttcctcattatct 45151744  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 31558507 - 31558560
Alignment:
Q  94 tgtttaaaatcattttagttttcttcaatatctgaaagctagagcattaaacat 147  Q
    ||||||| |||||| ||| ||||||| ||||||||||||||||  |||||||||    
T  31558507 tgtttaacatcattctagatttcttccatatctgaaagctagaagattaaacat 31558560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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