View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_low_2 (Length: 473)
Name: NF3911_low_2
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_low_2 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 44285855 - 44285603
Alignment:
| Q |
1 |
ttcccggtaacattgatcaagaaatttacgggcggaaccttcctttaagtctatcgagtgcctgacttctctattgatctgaccggctcgattgagacag |
100 |
Q |
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| T |
44285855 |
ttcccggtaacattgatcaatcaatttacgg-cggaatcttcctttaagtcaatcgagtgcctgacttctctattgatctgaccgaattgattgagacag |
44285757 |
T |
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| Q |
101 |
agagtaaaggtgcgaatcggctaaaaggctgagtccgagactgggagaagaactagcaagaaatgcagacttcgctccgcgcctttaggtaaagatcccc |
200 |
Q |
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| T |
44285756 |
agagtaaaggtgcgaatcggctaaaaggtcgagtccgagattgggagaagaactagcaagaaatgccgaatttgctccgcatcgttaggtaaagatcccc |
44285657 |
T |
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| Q |
201 |
attgtccaatcttcctttaatggatatattcttaaatgtaacttccggtaagaa |
254 |
Q |
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| T |
44285656 |
attggccaatcttcctttaatggatatattcttcaatgtaacttccggtaagaa |
44285603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 31 - 254
Target Start/End: Original strand, 44070187 - 44070410
Alignment:
| Q |
31 |
ggcggaaccttcctttaagtctatcgagtgcctgacttctctattgatctgaccggctcgattgagacagagagtaaaggtgcgaatcggctaaaaggct |
130 |
Q |
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| T |
44070187 |
ggcggaaccttcctttaagtcaatcaagtgcctgacttctctattgatctgaccggctagattgagacagagagtaaaggtgcaaaccggctaaacggct |
44070286 |
T |
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| Q |
131 |
gagtccgagactgggagaagaactagcaagaaatgcagacttcgctccgcgcctttaggtaaagatccccattgtccaatcttcctttaatggatatatt |
230 |
Q |
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| T |
44070287 |
gagtccgagattgggagaagaactagcaagaaatgccgaattcgctccgcattgtaaggtaaagatctccattgtccaatcttgctttaatggatatatt |
44070386 |
T |
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| Q |
231 |
cttaaatgtaacttccggtaagaa |
254 |
Q |
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| T |
44070387 |
cttcaatgtaacttctggtaagaa |
44070410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 300 - 465
Target Start/End: Original strand, 49237921 - 49238086
Alignment:
| Q |
300 |
cagactgcctctttctagatagattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgc |
399 |
Q |
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| T |
49237921 |
cagactgcctatttctagatagattctatggatgatgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccaatgcatgtcgtac |
49238020 |
T |
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| Q |
400 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
465 |
Q |
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| T |
49238021 |
cttgcaagattgagatatcaaggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
49238086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 320 - 465
Target Start/End: Complemental strand, 6329 - 6184
Alignment:
| Q |
320 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6329 |
agattctatggatgctgatctgtctctttattggaccaaagagtggctctccgcggagttcgttccgatgcctgtcgtgccttgcaagattgagatatca |
6230 |
T |
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| Q |
420 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
465 |
Q |
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| T |
6229 |
aggctggtaccaaagcaaagagaagaataagaatctaatctctgct |
6184 |
T |
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