View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_low_4 (Length: 424)
Name: NF3911_low_4
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 5823097 - 5823270
Alignment:
| Q |
21 |
gtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattcttctcagtctccaacaaa |
120 |
Q |
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| T |
5823097 |
gtctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctcagtctccaacaaa |
5823196 |
T |
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| Q |
121 |
catctctttccagatgtagctactgagaaagcacacacttcctttggcaagtcctcacacaccatcatagctac |
194 |
Q |
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| T |
5823197 |
catctctttccagatgaagctactgagaaagcacacacttcctttggcaagtcctcacacaccatcatagctac |
5823270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 5828779 - 5828607
Alignment:
| Q |
22 |
tctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattcttctcagtctccaacaaac |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828779 |
tctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctcagtctccaacaaac |
5828680 |
T |
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| Q |
122 |
atctctttccagatgtagctactgagaaagcacacacttcctttggcaagtcctcacacaccatcatagctac |
194 |
Q |
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| T |
5828679 |
atctctttcctgatgaagctactgagaaagcacacacttcctttggcaagtcctcacataccatcatagctac |
5828607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 5832976 - 5833139
Alignment:
| Q |
22 |
tctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattcttctcagtctccaacaaac |
121 |
Q |
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| T |
5832976 |
tctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttcaccattgacacctttctgagtctccaacaaac |
5833075 |
T |
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| Q |
122 |
atctctttccagatgtagctactgagaaagcacacacttcctttggcaagtcctcacacaccat |
185 |
Q |
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||||||| || |||| |||||||||||||| ||||||||||||||| ||||||||||| ||||| |
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| T |
5833076 |
atctcttccctgatgaagctactgagaaagtacacacttcctttggtaagtcctcacataccat |
5833139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 411
Target Start/End: Original strand, 5823383 - 5823480
Alignment:
| Q |
311 |
gtatgcataccaaaagatgtatggatgagaaaagaagaaagtaacaaaacaaaagccaataattttattgagaaagacatggttctacgtaaaagtataa |
410 |
Q |
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| T |
5823383 |
gtatgcataccaaaagatgtatggatgagaaaagaagagagtaacaaaatcaaaggc---aattttgttgagaaagacatggttctacgtaaaagtataa |
5823479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 404
Target Start/End: Complemental strand, 5828466 - 5828381
Alignment:
| Q |
316 |
cataccaaaagatgtatggatgagaaaagaagaaagtaacaaaacaaaagccaataattttattgagaaagacatggttctacgtaaaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||| |||||| |
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| T |
5828466 |
cataccaaaagatgtatggatgagaaaagaagaaagtaacaaaaccaaaggc---aatttggttgagaaagacatggttctatgtaaaa |
5828381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 5833260 - 5833304
Alignment:
| Q |
316 |
cataccaaaagatgtatggatgagaaaagaagaaagtaacaaaac |
360 |
Q |
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|||||| ||||| | |||||||||||||||||||||||| ||||| |
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| T |
5833260 |
catacctaaagaagcatggatgagaaaagaagaaagtaataaaac |
5833304 |
T |
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