View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_low_5 (Length: 412)
Name: NF3911_low_5
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 52732862 - 52732468
Alignment:
| Q |
1 |
gtgaaacgaatgataacaagaggaggaggtgtgtgtgagtgaagattctctcgtgcacacaaaatcttaattttagctgtcagctttgtgtacttgttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52732862 |
gtgaaacgaatgataacaagaggaggaggtgtgtgtgagtgaagattctctcgtgcacacaaaatcttaattttagctgtcagctttgtgtacttattta |
52732763 |
T |
|
| Q |
101 |
tttattcgtggaaacgcaattaagactccaactggcttggtctgggtggtatccgaccggttcatgcaggccgggtctgacccacaaacttaatctgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52732762 |
tttattcgtggaaacgcaattaagactccaactggcttggtctgggtggtatccgaccggttcatgcaggccgggtctgacccacaaacttaatctgctt |
52732663 |
T |
|
| Q |
201 |
caaccagcttctttctcacataattcaattattactctcttgttacaaataaaacctagcatataccatgacttcaattttatgtttgaaaattatcaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52732662 |
caaccagcttctttctcacataattcaattattactctcttgttacaaataaaacctagcatataccatgacttcaattttatgtttcaaaattatcaaa |
52732563 |
T |
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| Q |
301 |
tgaagctaattaagctagatatcgtcaagttctcaatttcttttcagttttatataaattaatgttaaaatagggtgagagggacatgatgtctg |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52732562 |
tgaagctaattaagctagatatcgtcaagttctcaatttcttttcagttttatataaattaatgttaaaatagggtgagagggacatgatgtctg |
52732468 |
T |
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