View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_low_6 (Length: 400)
Name: NF3911_low_6
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 68 - 380
Target Start/End: Complemental strand, 37616267 - 37615962
Alignment:
| Q |
68 |
atagcattcctttatttcatccatactatttggatcctgtgaatatctgcttttatctccctataactttctatgatagactcaaaagttaagatttgtt |
167 |
Q |
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| T |
37616267 |
atagcattcctttatttcatccatactatttggatcctgtgaatatctgcttttatctccctataactttctatgatagactcaaaagttaagatttgtt |
37616168 |
T |
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| Q |
168 |
gaatcacatgttctccatttacattattgttttaattttgttttttgtggatcggtagacctggcttgcataataatttgtcttacttctataccatggt |
267 |
Q |
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| T |
37616167 |
gaatcacatgttctccatttacattatttttttaattttgttttttgtggatcggtagacctggcttgcataataatttgtcttacttctataacatggt |
37616068 |
T |
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| Q |
268 |
ggaaactggaaatcatgtatttcctaggcttgttacgatatctgtaactttttatttatctcctcttgactctccaatcaagtttatcttatacattgat |
367 |
Q |
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| T |
37616067 |
g-------gaaatcatgtatttcctaggcttgttaccatatctctaactttttatttatctcctcttgactctccaatcaagtttatcttatagattgat |
37615975 |
T |
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| Q |
368 |
caaaagagtagtt |
380 |
Q |
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| T |
37615974 |
caaaagagtagtt |
37615962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37616384 - 37616319
Alignment:
| Q |
1 |
ttaatgtacgtttcgtatcacggtgagtatatcagaatcaccgcgatccattgtgattttgcaaaa |
66 |
Q |
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| T |
37616384 |
ttaatgtacgtttaatatcacggtgagtatatcagaatcaccgcgatccatcgtaattttgcaaaa |
37616319 |
T |
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