View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_low_7 (Length: 400)
Name: NF3911_low_7
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 50506245 - 50506544
Alignment:
| Q |
11 |
atacttataatcatgttcagagaggttaaacaaacagtatgttactaacaatgaacaaaattaacaaataaaacatcaaacagaagatcctagaaataaa |
110 |
Q |
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| T |
50506245 |
atacttataatcatgttcagagaggttaaa-aaacagtatgttactaacaataaacaaaattaacaaataaaacatcaaacagaagatcctagaaataaa |
50506343 |
T |
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| Q |
111 |
ttcatcaaaacagtcaatgtgctcaatcacctgaacaagccagtgaaaattttgaagcccctcactgttttcaacttccgcaacagcccctatcttggtt |
210 |
Q |
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| T |
50506344 |
ttcatcaaaacagtcaatgtgctcaatcacctgaacaagccagtgaaaattttgaagcccctcactgttttcaacttccgcaacagcccctatcttggtt |
50506443 |
T |
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| Q |
211 |
gtgatgaaggagatatgctcattccccatcacaatctcaagctcctgacgccctacccggttcggttctggccagttgtgatcatcttccttcataatct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50506444 |
gtgatgaaggagatatgctcattccccatcacaatctcaagctcctgacgccctacccggttcggttctggccagttgtgatcatcttccttcataatct |
50506543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 55280190 - 55280096
Alignment:
| Q |
217 |
aaggagatatgctcattccccatcacaatctcaagctcctgacgccctacccggttcggttctggccagttgtgatcatcttccttcataatctg |
311 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| || || |||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
55280190 |
aaggagatatgctcattccccatcacaatctcaagttcctgacgaccaacacggtctggttctggccagttgttatcatcttccttcataatctg |
55280096 |
T |
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