View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_low_8 (Length: 389)
Name: NF3911_low_8
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 50505927 - 50505682
Alignment:
| Q |
18 |
ttgactaggtacagcatactgtatttcagaattttctttaaaatttaagcatatcaaacctgcttaagcatatcaaaaccgcttaacaactagactgaaa |
117 |
Q |
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| T |
50505927 |
ttgactaggtacagcatactgtatttcagaattttctttaaaatttaagcatatcaaacctgcttaagcatatcaaaaccgcttaacaactagactgaaa |
50505828 |
T |
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| Q |
118 |
cgcttgccttgattagggactatgagaatttaagagagcgcataactgaatgaagaaaccaaatataaacttgcccagcaacacacatcaatcactatca |
217 |
Q |
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| T |
50505827 |
cgcttgccttgattagggactatgagaatttaagagagcgcataactaaatgaagaaaccaaatataaacttgcccagcaacacacatcaatcactatca |
50505728 |
T |
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| Q |
218 |
tacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
263 |
Q |
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| T |
50505727 |
tacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
50505682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 259 - 386
Target Start/End: Complemental strand, 50505649 - 50505522
Alignment:
| Q |
259 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
358 |
Q |
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| T |
50505649 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
50505550 |
T |
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| Q |
359 |
atttttcttatcagataatgcctatgct |
386 |
Q |
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| T |
50505549 |
atttttcttatcagataatgcctttgct |
50505522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 81 - 261
Target Start/End: Original strand, 28733378 - 28733556
Alignment:
| Q |
81 |
ttaagcatatcaaaaccgcttaacaactagactgaaacgcttgccttgattagggactatgagaatttaagagagcgcataactgaatgaagaaaccaaa |
180 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| | ||||||| |||||||| |||||| |
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| T |
28733378 |
ttaagcatatcaaaaccgcttaacaactagaaagaaatgcttgccttgattaaggactatgagaatttaagagaacacataactaaatgaagagaccaaa |
28733477 |
T |
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| Q |
181 |
tataaacttgcccagcaacacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggtttt |
261 |
Q |
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| T |
28733478 |
tataaa--tgcctagcaacatacatcaatcactatcatgcacgaacctaaaaatcaccaatatagtttatgcaatggtttt |
28733556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 285 - 378
Target Start/End: Original strand, 28733612 - 28733705
Alignment:
| Q |
285 |
tttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgtatttttcttatcagataatg |
378 |
Q |
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| T |
28733612 |
tttcatcatattttagataatgatttatatattccccatgaggccatgatatgttagtattttgttttgcttatatttttcttatcagataatg |
28733705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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