View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3911_low_9 (Length: 364)
Name: NF3911_low_9
Description: NF3911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3911_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 56175415 - 56175079
Alignment:
| Q |
11 |
cacagaaggagggtcatccattgcatcaaattcaaatatttctgcgaagattgacaatgtttttaagaaataagtatttatcattaaatgatccatatga |
110 |
Q |
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| T |
56175415 |
cacagaaggagggtcatccattgcatcaaattcaaatatttctgcgaagattgacaatgtttttaagaaataagtatttatcattaaatgatccatatga |
56175316 |
T |
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| Q |
111 |
gatacagggaaaaaccatactcatgggttagatagtaagaggttcatatttggaatatggcgcaattaaatgatnnnnnnnntatgatactcaccattcc |
210 |
Q |
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| T |
56175315 |
gatacagggaaaaaccatactcatgcgttagatagtaagaggttcatatttggaatatggcgcaattaaatgataaaaaaaatatgatactcaccattcc |
56175216 |
T |
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| Q |
211 |
atgaaggattagatttttggaacttgattgagctagatcttgttttcccattgcaagtaaaaacaacatatggattacagagtccgccagaatcaacagc |
310 |
Q |
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| T |
56175215 |
atgaaggattagatttttggaacttgattgagctagatcttgttttcccattgcaagtaaaaacaacatatggattacagagtccgccagaatcaacagc |
56175116 |
T |
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| Q |
311 |
cgctatattgcttccttcaattaaagccacagttagt |
347 |
Q |
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| T |
56175115 |
cgctatattgcttccttcaattaaagccacagttagt |
56175079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 193 - 345
Target Start/End: Complemental strand, 9997209 - 9997057
Alignment:
| Q |
193 |
tatgatactcaccattccatgaaggattagatttttggaacttgattgagctagatcttgttttcccattgcaagtaaaaacaacatatggattacagag |
292 |
Q |
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| T |
9997209 |
tatgatactcaccattccataaaggattagatttttggaacttgattgaactggttcttactttcccattgcaagtaaacaccacatatgggtcagagta |
9997110 |
T |
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| Q |
293 |
tccgccagaatcaacagccgctatattgcttccttcaattaaagccacagtta |
345 |
Q |
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| T |
9997109 |
gccaccagagtcaacagaagctaaattgtttccttcaatcaaggcaacagtta |
9997057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 9997323 - 9997280
Alignment:
| Q |
11 |
cacagaaggagggtcatccattgcatcaaattcaaatatttctg |
54 |
Q |
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| T |
9997323 |
cacagaaggaggatcatccattgcatcaaactcaaatatttctg |
9997280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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