View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3912_high_3 (Length: 415)
Name: NF3912_high_3
Description: NF3912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3912_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 4134314 - 4133979
Alignment:
| Q |
18 |
caagcgccaattccaaaccgcgaaatttcaaaatttgatatatcttttaacattatcttgtataactcttttgttggattttgatgaattcaaacccaaa |
117 |
Q |
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| T |
4134314 |
caagcgccaattccaaaccgcgaaatttcaaaatttgatatatcttttaacattatcttgtataactcttttgttggattttgatgaattcaaacccaaa |
4134215 |
T |
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| Q |
118 |
ccttcaaagcatcaattctcaggtacccttcttcatattcctctaatctaacctcttttcattattcatcttctcattttctttcgttctatcttttagg |
217 |
Q |
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| T |
4134214 |
ccttcaaagcatcaattctcaggtacccttcttcatattcctctaatctaacctcttttcattattcatcttctcattttctttcgttctatcttttagg |
4134115 |
T |
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| Q |
218 |
ttccgagttcgatgtcgtcgccctcatgcccttctggtttgtatccataccttaaaataataaaacatggaaattgcaattaaaaatcaataattttgag |
317 |
Q |
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| T |
4134114 |
ttccgagttcgatgtcgtcgccctcatgcccttctggtttgtatccataccttacaataataaaacatggaaattgcaattaaaaatcaataattttgag |
4134015 |
T |
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| Q |
318 |
ggttctaatttttaaacaataaaacctaaaaagtta |
353 |
Q |
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| T |
4134014 |
ggttctaatttttaaacaataaaacctaaaaagtta |
4133979 |
T |
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