View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3912_low_1 (Length: 470)
Name: NF3912_low_1
Description: NF3912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3912_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 38216524 - 38216058
Alignment:
| Q |
1 |
cccacttttccctatttcatctcatcacgttttacattctattcaattcaatgtgcgctcccacattttattattaattaattaatttctaataccaccg |
100 |
Q |
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| T |
38216524 |
cccacttttccctatttcatctcatcacgttttacattctattcaattcaatgtgcgctcccactttttattattaattaattaatttctaataccaccg |
38216425 |
T |
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| Q |
101 |
tcccaaacacagtcctatgactcatttgtctttttgaaacaaacactagcaaaaacaagttgccccacccacaagaaaatgtattgttattcacaaaaca |
200 |
Q |
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| T |
38216424 |
tcccaaacacagtcctatgactcatttgtctttttgaaacaaacactagcaaaaacaagttgccccacccacaagaaaatgtattgttattcacaaaaca |
38216325 |
T |
|
| Q |
201 |
gacaaaccaaacccactttcacaattgcacttaatctcatccttatccacaacccttcccaatgtcctttcctatataaataa-ttattcaatcactttt |
299 |
Q |
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| T |
38216324 |
gacaaaccaaacccactttcacaattgcacttaatctcatccttatccacaacccttcccaatgtcctttcc--tataaataatttattcaatcactttt |
38216227 |
T |
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| Q |
300 |
gctttttcatcaagcctaaaaaacaatatataccaacttcttcaattacacacaaaatacaatacaacaaaatctcattaactttatactatagtaagag |
399 |
Q |
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| T |
38216226 |
gctttttcatcaagcctaaaaaacaatatataccaacttcttcaatt--acacaaaatacaatacaacaaaatctcattaactttatactatagtaagag |
38216129 |
T |
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| Q |
400 |
aaatatcaatatgtctgacattgctatgttagtagctgaggagtatgagagaagagtcaagagtttaaaaa |
470 |
Q |
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| T |
38216128 |
aaatatcaatatgtctgacattgctatgttagtagctgaggagtatgagagaagagtcaagagtttaaaaa |
38216058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 168 - 324
Target Start/End: Complemental strand, 23608744 - 23608590
Alignment:
| Q |
168 |
cccacaagaaaatgtattgttattcacaaaacagacaaaccaaacccactttcacaattgcacttaatctcatccttatccacaacccttcccaatgtcc |
267 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | | ||||||||||||||||| ||||||||||||||||| |
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| T |
23608744 |
cccaaaagaaaatgtattgttattcacaaaatagacaaaccaaacccacttacacaattggattcaatctcatccttatccaaaacccttcccaatgtcc |
23608645 |
T |
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| Q |
268 |
tttcctatataaataattattcaatcacttttgctttttcatcaagcctaaaaaaca |
324 |
Q |
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| T |
23608644 |
tttcc--aataaatgaatattcaatcactattgctttttcatcaagccaaaaaaaca |
23608590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 23608844 - 23608739
Alignment:
| Q |
1 |
cccacttttccctatttcatctcatcacgttttacattctattcaattcaatgtgcgctcccacattttattattaattaa----ttaatttctaatacc |
96 |
Q |
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| T |
23608844 |
cccacttttccctatttcatctcatcacgttttac-----attcaattcaatgtgcactcccactttttattattaattaattagttaatttctaatacc |
23608750 |
T |
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| Q |
97 |
accgtcccaaa |
107 |
Q |
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| T |
23608749 |
atcgtcccaaa |
23608739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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