View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3912_low_2 (Length: 457)
Name: NF3912_low_2
Description: NF3912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3912_low_2 |
 | |
|
| [»] scaffold0188 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 31 - 442
Target Start/End: Complemental strand, 50980562 - 50980151
Alignment:
| Q |
31 |
agcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctggcacagaaatcaagatggttattcggtt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980562 |
agcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctggcacagaaatcaagatggttattcggtt |
50980463 |
T |
|
| Q |
131 |
gaggctgattcccattggtttttcaacagattttggcaaccagttgatgattccaccgctcatgttttccattgatacattgatttactgctcttttcac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980462 |
gaggctgattcccattggtttttcaacagattttggcatccagttgatgattccaccgctcatgttttccattgatacattgatttactgctcttttcac |
50980363 |
T |
|
| Q |
231 |
aagaatactcaatgtgatgttaatcaataaagtcatgattatgtaataattgcttgtaggtcaatcaattatgattatcattacctttcgttctactttg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50980362 |
aagaatactcaatgtgatgttaatcaataaagtcatgattatgtaataattgcttgtaggtcaatcaattatgattatcattacctttcgttctactttg |
50980263 |
T |
|
| Q |
331 |
tatgactgttaaatagatgtaaaggagcaagcatcttgttttatgtgtaaaaataaatattacaaaactttaacaagacttctcagctagctcaattgca |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50980262 |
tatgactgttaaatagatgtaaaggagcaagcatcttgttttatgtgtaaaaataaatattacaaaactttaacaagacttctcagctagatcaattgca |
50980163 |
T |
|
| Q |
431 |
ttgtcatatcat |
442 |
Q |
| |
|
|||||||||||| |
|
|
| T |
50980162 |
ttgtcatatcat |
50980151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 50965125 - 50964923
Alignment:
| Q |
17 |
aggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctggcacagaaatcaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
50965125 |
aggcagagtacattagcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactataactatcacagaaatcaaa |
50965026 |
T |
|
| Q |
117 |
atggttattcggttgaggctgattcccattggtttttcaacagattttggcaaccagttgatgattccaccgctcatgttttccattgatacattgattt |
216 |
Q |
| |
|
|||||||||| | ||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||| || || | |||||||||| |
|
|
| T |
50965025 |
atggttattctgatgaggttgattccaattggttttttaacagattttggcacccagttgatgattccacatctcatgtttccctttaacacattgattt |
50964926 |
T |
|
| Q |
217 |
act |
219 |
Q |
| |
|
||| |
|
|
| T |
50964925 |
act |
50964923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 13641284 - 13641456
Alignment:
| Q |
31 |
agcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctggcacagaaatcaagatggttattcggtt |
130 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| || ||| |
|
|
| T |
13641284 |
agcatacagagaggccagctttggacatgccatttttgacataaagaacagaacacatgctcactacagctggcataggaatcaagatggttactctgtt |
13641383 |
T |
|
| Q |
131 |
gaggctgattcccattggtttttcaacagattttggcaaccagttgatgattccaccgctcatgttttccatt |
203 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
13641384 |
gaggctgattctcattggttcttcaacagattttggcacccagttgatgattccacaactcatgtttcccatt |
13641456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 13715355 - 13715424
Alignment:
| Q |
207 |
acattgatttactgctcttttcacaagaatactcaatgtgatgttaatcaataaagtcatgattatgtaat |
277 |
Q |
| |
|
|||||||||||| | |||||||| || |||||||| |||||||||||||||||| ||||||||| |||||| |
|
|
| T |
13715355 |
acattgatttaccgttcttttcagaa-aatactcattgtgatgttaatcaataatgtcatgattttgtaat |
13715424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 32 - 185
Target Start/End: Original strand, 11664 - 11817
Alignment:
| Q |
32 |
gcattcagagaggctagctttggacatgccattttcgacataaagaacagaacacatgctcactatagctggcacagaaatcaagatggttattcggttg |
131 |
Q |
| |
|
||||| ||||| || |||||||||||||| ||||| ||||||||||| || ||||||||| ||||||||||||| ||||||||||||||| || | ||| |
|
|
| T |
11664 |
gcatttagagaagccagctttggacatgcaatttttgacataaagaataggacacatgcttactatagctggcatagaaatcaagatggtgatgctgtta |
11763 |
T |
|
| Q |
132 |
aggctgattcccattggtttttcaacagattttggcaaccagttgatgattcca |
185 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
11764 |
agagtgattccctttggtttttcaacagattttggaacccggttgatgattcca |
11817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 33632699 - 33632608
Alignment:
| Q |
189 |
ctcatgttttccattgatacattgatttactgctcttttcacaagaatactcaatgtgatgttaatcaataaagtcatgattatgtaataatt |
281 |
Q |
| |
|
||||||||| ||||| | ||||||||||||| |||||||| || | ||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
33632699 |
ctcatgtttcccattaacacattgatttactactcttttccaaaacaaactcaatgtgatgttaatcaataaagt-atgattatgcaataatt |
33632608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 33632578 - 33632500
Alignment:
| Q |
297 |
aattatgattatcattacctttcgttctactttgtatgactgttaaatagatgtaaaggagcaagcatcttgttttatg |
375 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| ||||| | || ||| ||||||| ||||||||||| ||||| |
|
|
| T |
33632578 |
aattatgattatcatttgctttcattctactttgtatcactgtcatgtaaatgcaaaggaggaagcatcttgtgttatg |
33632500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University