View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3912_low_4 (Length: 374)
Name: NF3912_low_4
Description: NF3912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3912_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 50234377 - 50234732
Alignment:
| Q |
1 |
agtcacaaagcatggccaaccatccaaaatgcttccctctttaaaccaccagatcacaatttctgttacaattttgactttactataattaaaattgacc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50234377 |
agtcacaaagcatgcccaaccatccaaaatgcttccctctttaaaccaccagatcacaatttctgttacaattttgactttactataattaaaattgacc |
50234476 |
T |
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| Q |
101 |
actaatcccacacaccacacatttataaaccaaacgtatatatatacctacacacatcaaaacctacaaactcaacaatttcatataccaccaacttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50234477 |
actaatcccacacaccacacatttataaaccaaacgcatatatatacctacacacatcaaaacctacaaactcaacaatttcatataccaccaacttggt |
50234576 |
T |
|
| Q |
201 |
ttctgattgtccctgatcaaagaagagaaagcaagaaaaaagaacaatgggtttgagaaacacctctgttttgtgcttggcacttatgttgtctttctct |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50234577 |
ttcggattgtccctgatcaaagaagagaaagcaagaaaaaagaacaatgggtttgagaaacacctctgttctgtgcttggcacttatgttgtctttctct |
50234676 |
T |
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| Q |
301 |
tcggcgattaattgtttggacataaccaaaactttgggacaatatccggaactctc |
356 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50234677 |
tcggccattaattgtttggacataaccaaaactttgggacaatatccggaactctc |
50234732 |
T |
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