View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3912_low_6 (Length: 245)
Name: NF3912_low_6
Description: NF3912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3912_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 17184510 - 17184268
Alignment:
| Q |
8 |
aaatttgcaatcaacacaattttacattcacttctactgttctttccatatcattcatttcattaaaatataataattgaatggcaaggaactta----- |
102 |
Q |
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| T |
17184510 |
aaatttgcaattaacacaattttacattcacttccactgtt-tgtccatatcattcatctcattaaaatataataattgaatggcaaggaacttatgtat |
17184412 |
T |
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| Q |
103 |
----atttcgaccagtaaaattttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtctctgtaagacattttggt |
198 |
Q |
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| T |
17184411 |
aagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtatctgtaagacattttggt |
17184312 |
T |
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| Q |
199 |
ttcaaaacttatagctgttcaaatgtactattgctttctctgct |
242 |
Q |
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| T |
17184311 |
ttcaaaacttatagctgttcaaatgtactattgctttccctgct |
17184268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 17195896 - 17196138
Alignment:
| Q |
8 |
aaatttgcaatcaacacaattttacattcacttctactgttctttccatatcattcatttcattaaaatataataattgaatggcaaggaactta----- |
102 |
Q |
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||||||||||| |||||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17195896 |
aaatttgcaattaacacaattttacattcacttccactgtt-tgtccatatcattcatctcattaaaatataataattgaatggcaaggaacttatgtat |
17195994 |
T |
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| Q |
103 |
----atttcgaccagtaaaattttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtctctgtaagacattttggt |
198 |
Q |
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| T |
17195995 |
aagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtcactgtaggacattttggt |
17196094 |
T |
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| Q |
199 |
ttcaaaacttatagctgttcaaatgtactattgctttctctgct |
242 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
17196095 |
ttcaagacttatagctgttcaaatgtactattgctttccctgct |
17196138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 17193229 - 17193267
Alignment:
| Q |
196 |
ggtttcaaaacttatagctgttcaaatgtactattgctt |
234 |
Q |
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| T |
17193229 |
ggtttcaaaacttatagctgtccaaatgtactattgctt |
17193267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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