View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3912_low_9 (Length: 231)
Name: NF3912_low_9
Description: NF3912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3912_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 40225159 - 40224967
Alignment:
| Q |
22 |
atgctcgtctctgactcctacgccaaagacgctatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcatcgacgctctctgttctcatc |
121 |
Q |
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| T |
40225159 |
atgctcgtctctgactcctacgccaaagacgctatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcatcgacgctctctgttctcatc |
40225060 |
T |
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| Q |
122 |
tatctcacctctcctccgccgctgattacagcaatgttttcgccgctatccatcgtcggagactccattggatccaaatccttcagatgcaga |
214 |
Q |
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| T |
40225059 |
tctctcacctctcctccgccgctgattacagcaatgttttcgccgctatccatcgtcggagactccattggatccaaatccttcagatgcaga |
40224967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 51588077 - 51588235
Alignment:
| Q |
48 |
agacgctatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcatcgacgctctctgttctcatctatctcacctctcctccgccgctgat |
147 |
Q |
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| T |
51588077 |
agacgcaatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcgtcgacgctct--------atctctctcacctatcctccgccgttgat |
51588168 |
T |
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| Q |
148 |
tacagcaatgttttcgccgctatccatcgtcggagactccattggatccaaatccttcagatgcaga |
214 |
Q |
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| T |
51588169 |
tacatcaatgttttcgcccctatccatcgtcgtagactccattggatccaaatctttcagatgcaga |
51588235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 37511810 - 37511733
Alignment:
| Q |
37 |
tcctacgccaaagacgctatcctcgcttggtttcacggcgagttcgccgctgccaacgcaatcatcgacgctctctgt |
114 |
Q |
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|||||||||||||| || || || |||||||||||||||||||||||||| |||||||| ||||| || ||||||||| |
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| T |
37511810 |
tcctacgccaaagatgcaatgcttgcttggtttcacggcgagttcgccgccgccaacgcgatcattgatgctctctgt |
37511733 |
T |
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