View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_high_10 (Length: 463)
Name: NF3913_high_10
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 50 - 447
Target Start/End: Complemental strand, 42591567 - 42591174
Alignment:
| Q |
50 |
ccaaatccaagtttaggagaattaccagaaagttgcatagctgttataatggaatacatggatcctcctcagatttgtaaattagcttctgtcaaccgtg |
149 |
Q |
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| T |
42591567 |
ccaaatccaagtttaggagaattaccagaaagttgcatagctgttataatggaatacatggatcctcctcagatttgtaaattagcttctctcaaccgtg |
42591468 |
T |
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| Q |
150 |
cttttcatggtgcttctttggctgattttgtttgggaatccaaacttccctctaattatcatgtcatcattcaaaaaatctttgatggttcttcttttcc |
249 |
Q |
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| T |
42591467 |
cttttcatggtgcttctttggctgattttgtttgggaatccaaacttccctctaattatcatgtcatcattcaaaaaatctttgatggttcttcttttcc |
42591368 |
T |
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| Q |
250 |
ttctcatttagggaaaagagggatttattcaagactttgttccctcaatacttttgatgaaggcaccaaggtaataaatttacataaaaatcgacgcttt |
349 |
Q |
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| T |
42591367 |
ttctcatttagggaaaagagggatttattcaagactttgttccctcaatacttttgatgaaggcaccaaggtaataaattaacataaaaatcgacgcttt |
42591268 |
T |
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| Q |
350 |
tacttgttaagttaatgtgaagagaaaagaagaaaa-gnnnnnnnnnnnnnnngattagtttttgtgttattactgtagaaagtttggttggatagaag |
447 |
Q |
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| T |
42591267 |
tacttg-----ttaatgtgaagagaaaagaagaaaaggtttttttttttttttgattagtttttgtgttattactgtagaaagtttggttggatagaag |
42591174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 45798733 - 45798782
Alignment:
| Q |
140 |
gtcaaccgtgcttttcatggtgcttctttggctgattttgtttgggaatc |
189 |
Q |
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| T |
45798733 |
gtcaaccgtgcttttcatagagcttcttctgctgattttgtgtgggaatc |
45798782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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