View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_high_12 (Length: 433)

Name: NF3913_high_12
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_high_12
NF3913_high_12
[»] chr3 (28 HSPs)
chr3 (17-421)||(30131007-30131409)
chr3 (93-354)||(30135759-30136026)
chr3 (93-354)||(30141888-30142155)
chr3 (93-354)||(30145310-30145577)
chr3 (120-327)||(30049489-30049702)
chr3 (93-196)||(30132956-30133059)
chr3 (93-196)||(30134352-30134455)
chr3 (93-196)||(30143903-30144006)
chr3 (113-207)||(30157310-30157404)
chr3 (324-421)||(30049367-30049460)
chr3 (159-323)||(30072372-30072542)
chr3 (120-202)||(30459716-30459795)
chr3 (324-421)||(30173009-30173102)
chr3 (136-327)||(30068773-30068970)
chr3 (118-207)||(30173256-30173345)
chr3 (343-421)||(30085873-30085948)
chr3 (118-207)||(30086107-30086196)
chr3 (361-421)||(30055811-30055871)
chr3 (152-271)||(30055983-30056108)
chr3 (323-421)||(30072247-30072342)
chr3 (376-421)||(30135720-30135765)
chr3 (376-421)||(30141849-30141894)
chr3 (376-421)||(30145271-30145316)
chr3 (212-327)||(30462971-30463086)
chr3 (158-207)||(30079714-30079763)
chr3 (160-207)||(30171975-30172022)
chr3 (376-421)||(30463139-30463184)
chr3 (291-327)||(30173130-30173166)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 30131409 - 30131007
Alignment:
Q  17 attatggatgtaatggcgattgtgtctgcgcgttaacttggcagcatccacttattcctatatatgaatgttatgatcctcgttcatatgcagagcttaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||   |||| || ||||||| ||||||||||||||||||||||||||||||||||||||    
T  30131409 attatggatgtaatggcgattgtgtctgcgcgttaacttggca---tccagttgttcctatgtatgaatgttatgatcctcgttcatatgcagagcttaa 30131313  T
Q  117 gaagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaatcttcaatat 216  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30131312 gaagaaggttgaggaaccacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaatcttcaatat 30131213  T
Q  217 ggcttgtgtttcccctctgtctctgaagcagtaaacgcattcaagatggcctctagcttgaaattcgnnnnnnncttcttgaagatgtctcttcctgctt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  30131212 ggcttgtgtttcccctctgtctctgaagcagtaaacgcattcaagatggcctctagcttgaaattcgaaaaagacttcttgaagatgtctcttcctgctt 30131113  T
Q  317 aatatcgatattatgcatttatgtactactttaaataagtagcggtctttgtttccgact-aaataattgggtttcttaatctccatccaaatttcaata 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30131112 aatatcgatattatgcatttatgtactactttaaataagtagcggtctttgtttccgactaaaataattgggtttcttaatctccatccaaatttcaata 30131013  T
Q  416 atgatg 421  Q
    ||||||    
T  30131012 atgatg 30131007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 93 - 354
Target Start/End: Complemental strand, 30136026 - 30135759
Alignment:
Q  93 tcctcgttcatatgcagagcttaagaagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgt 192  Q
    ||||| ||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  30136026 tcctcattcatctgcagagcttaagaagaaggtagaggaacaacctaagttatgttggtctcatactgaatgcacagaaaagggtagtgggaattattgt 30135927  T
Q  193 gctcgttttcctaat------cttcaatatggcttgtgtttcccctctgtctctgaagcagtaaacgcattcaagatggcctctagcttgaaattcgnnn 286  Q
    |||||||||||||||      ||  |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||       
T  30135926 gctcgttttcctaattccaatctcaaatatggcttgtgttttccctctatctctgaagcagtaaacacattcaagatggcctctagcttgaaattcgaaa 30135827  T
Q  287 nnnncttcttgaagatgtctcttcctgcttaatatcgatattatgcatttatgtactactttaaataa 354  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30135826 aagacttcttgaagatgtctcttcctgcttaatatcgatattatgcatttatgtacaactttaaataa 30135759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 93 - 354
Target Start/End: Complemental strand, 30142155 - 30141888
Alignment:
Q  93 tcctcgttcatatgcagagcttaagaagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgt 192  Q
    ||||| ||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  30142155 tcctcattcatctgcagagcttaagaagaaggtagaggaacaacctaagttatgttggtctcatactgaatgcacagaaaagggtagtgggaattattgt 30142056  T
Q  193 gctcgttttcctaat------cttcaatatggcttgtgtttcccctctgtctctgaagcagtaaacgcattcaagatggcctctagcttgaaattcgnnn 286  Q
    |||||||||||||||      ||  |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||       
T  30142055 gctcgttttcctaattccaatctcaaatatggcttgtgttttccctctatctctgaagcagtaaacacattcaagatggcctctagcttgaaattcgaaa 30141956  T
Q  287 nnnncttcttgaagatgtctcttcctgcttaatatcgatattatgcatttatgtactactttaaataa 354  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30141955 aagacttcttgaagatgtctcttcctgcttaatatcgatattatgcatttatgtacaactttaaataa 30141888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 93 - 354
Target Start/End: Complemental strand, 30145577 - 30145310
Alignment:
Q  93 tcctcgttcatatgcagagcttaagaagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgt 192  Q
    ||||| ||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  30145577 tcctcattcatctgcagagcttaagaagaaggtagaggaacaacctaagttatgttggtctcatactgaatgcacagaaaagggtagtgggaattattgt 30145478  T
Q  193 gctcgttttcctaat------cttcaatatggcttgtgtttcccctctgtctctgaagcagtaaacgcattcaagatggcctctagcttgaaattcgnnn 286  Q
    |||||||||||||||      ||  |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||       
T  30145477 gctcgttttcctaattccaatctcaaatatggcttgtgttttccctctatctctgaagcagtaaacacattcaagatggcctctagcttgaaattcgaaa 30145378  T
Q  287 nnnncttcttgaagatgtctcttcctgcttaatatcgatattatgcatttatgtactactttaaataa 354  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30145377 aagacttcttgaagatgtctcttcctgcttaatatcgatattatgcatttatgtacaactttaaataa 30145310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 120 - 327
Target Start/End: Complemental strand, 30049702 - 30049489
Alignment:
Q  120 gaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttc------ctaatcttcaa 213  Q
    |||||||||||||   ||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||  ||||      |||||||  ||    
T  30049702 gaaggttgaggaacatcctaagttatgtatgtctcatgatgaatgcacaaaaaagggtagtgggaattattgtgctcactttccaaattctaatctcaaa 30049603  T
Q  214 tatggcttgtgtttcccctctgtctctgaagcagtaaacgcattcaagatggcctctagcttgaaattcgnnnnnnncttcttgaagatgtctcttcctg 313  Q
    |||||||  |||||  |||||||||||||||||  | |||||| |||||| ||||||||||||||||||        |||||||||||||||||||||||    
T  30049602 tatggctactgttttgcctctgtctctgaagcacaagacgcatacaagatagcctctagcttgaaattcaagaaagacttcttgaagatgtctcttcctg 30049503  T
Q  314 cttaatatcgatat 327  Q
    ||||||||||||||    
T  30049502 cttaatatcgatat 30049489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 30133059 - 30132956
Alignment:
Q  93 tcctcgttcatatgcagagcttaagaagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgt 192  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30133059 tcctcgttcatctgcagagcttaagaagaaggttgaggaacaacctaacttatgttggtctcatgctgaatgcacataaaagggtagtggtaattattgt 30132960  T
Q  193 gctc 196  Q
    ||||    
T  30132959 gctc 30132956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 30134455 - 30134352
Alignment:
Q  93 tcctcgttcatatgcagagcttaagaagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgt 192  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30134455 tcctcgttcatctgcagagcttaagaagaaggttgaggaacaacctaacttatgttggtctcatgctgaatgcacataaaagggtagtggtaattattgt 30134356  T
Q  193 gctc 196  Q
    ||||    
T  30134355 gctc 30134352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 30144006 - 30143903
Alignment:
Q  93 tcctcgttcatatgcagagcttaagaagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgt 192  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  30144006 tcctcgttcatctgcagagcttaagaagaaggttgaggaacaacctaacttatgttggtctcatgctgaatgcacataaaagggtagtggtaattattgt 30143907  T
Q  193 gctc 196  Q
    ||||    
T  30143906 gctc 30143903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 30157404 - 30157310
Alignment:
Q  113 ttaagaagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaat 207  Q
    |||| |||||||||||||||  |||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  30157404 ttaaaaagaaggttgaggaacaacctaacttatgttggtctcatgatgaatgcacaaaaaagggtagtgggaattattgtgctcgctttcctaat 30157310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 324 - 421
Target Start/End: Complemental strand, 30049460 - 30049367
Alignment:
Q  324 atattatgcatttatgtactactttaaataagtagcggtctttgtttccgactaaataattgggtttcttaatctccatccaaatttcaataatgatg 421  Q
    ||||||||||| |||||||||||||||||| ||||   |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  30049460 atattatgcatctatgtactactttaaata-gtag---tctttgtttccgtctaaataattgggtttcttaatatccatccaaatttcaataatgatg 30049367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 159 - 323
Target Start/End: Complemental strand, 30072542 - 30072372
Alignment:
Q  159 tgaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaa-tct----tc-aatatggcttgtgtttcccctctgtctctgaagcagtaaac 252  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||||| |||    || |||||||||| |||||  ||||||||||| |||||  | ||    
T  30072542 tgaatgcaccaaaaagggtagtggaaattattgtgctcattttcctaattctgatatcaaatatggcttctgttttgcctctgtctctaaagcacaagac 30072443  T
Q  253 gcattcaagatggcctctagcttgaaattcgnnnnnnncttcttgaagatgtctcttcctgcttaatatcg 323  Q
    ||||||||||||||||||||||  ||||||        ||||||||||||||||||||| |||||||||||    
T  30072442 gcattcaagatggcctctagctataaattcaagaatgacttcttgaagatgtctcttcccgcttaatatcg 30072372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 30459716 - 30459795
Alignment:
Q  120 gaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttc 202  Q
    |||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  30459716 gaaggttgaggaa---cctaagttatgttggtctcatgatgaatgcacaaaaaagggtagtgggaattattgtgctcgttttc 30459795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 324 - 421
Target Start/End: Complemental strand, 30173102 - 30173009
Alignment:
Q  324 atattatgcatttatgtactactttaaataagtagcggtctttgtttccgactaaataattgggtttcttaatctccatccaaatttcaataatgatg 421  Q
    ||||||||||| |||||||||||||||||| ||||   ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  30173102 atattatgcatctatgtactactttaaata-gtag---tctttgtttccaactaaataattggatttcttaatatccatccaaatttcaataatgatg 30173009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 327
Target Start/End: Complemental strand, 30068970 - 30068773
Alignment:
Q  136 cctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttc------ctaatcttcaatatggcttgtgtttcc 229  Q
    ||||||||||||  |||||||| ||||||||| |||||||||||||| |||||||||||||  ||||      |||||||  || ||||||| |||||      
T  30068970 cctaagttatgtatgtctcatgatgaatgcacgaaaaagggtagtgggaattattgtgctcactttccaaattctaatctcaaacatggcttctgttttg 30068871  T
Q  230 cctctgtctctgaagcagtaaacgcattcaagatggcctctagcttgaaattcgnnnnnnncttcttgaagatgtctcttcctgcttaatatcgatat 327  Q
    |||||||||||||||||  | |||||| |||||||||||||||    ||||||        |||||||||||||||| ||||||||||||| ||||||    
T  30068870 cctctgtctctgaagcataagacgcatacaagatggcctctagtaataaattcaagaatgacttcttgaagatgtctgttcctgcttaataccgatat 30068773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 30173345 - 30173256
Alignment:
Q  118 aagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaat 207  Q
    |||||||||||||||  |||||| ||||||||||||||||||||||||| || |||||||||||| ||||||||||||| | ||||||||    
T  30173345 aagaaggttgaggaacaacctaacttatgttggtctcatgctgaatgcataagaaagggtagtgggaattattgtgctcatcttcctaat 30173256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 421
Target Start/End: Complemental strand, 30085948 - 30085873
Alignment:
Q  343 tactttaaataagtagcggtctttgtttccgactaaataattgggtttcttaatctccatccaaatttcaataatgatg 421  Q
    ||||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30085948 tactttaaataagtag---tctttgtttccaactaaataattgggtttcttaatatccatccaaatttcaataatgatg 30085873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 30086196 - 30086107
Alignment:
Q  118 aagaaggttgaggaagcacctaagttatgttggtctcatgctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaat 207  Q
    |||||||||||||||  |||||| ||||||||||||||||||||||||| || |||||||||||| ||||| ||||||| | ||||||||    
T  30086196 aagaaggttgaggaactacctaacttatgttggtctcatgctgaatgcataagaaagggtagtggaaattactgtgctcatcttcctaat 30086107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 30055871 - 30055811
Alignment:
Q  361 gtctttgtttccgactaaataattgggtttcttaatctccatccaaatttcaataatgatg 421  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  30055871 gtctttgtttccgactaaataattgggtttcttaatatccatacaaatttcaataatgatg 30055811  T

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Target: chr3; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 271
Target Start/End: Complemental strand, 30056108 - 30055983
Alignment:
Q  152 ctcatgctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaat-ct----tcaa-tatggcttgtgtttcccctctgtctctgaagc 245  Q
    ||||| ||||||||||||| ||||||||||| |||| ||||||||||||| ||||| ||    |||| ||||||| ||||||  ||||| ||||||||||    
T  30056108 ctcatactgaatgcacaaagaagggtagtgggaatttttgtgctcgttttgctaattctgatatcaaatatggctggtgttttgcctctatctctgaagc 30056009  T
Q  246 agtaaacgcattcaagatggcctcta 271  Q
    || ||||||||||||||| |||||||    
T  30056008 agaaaacgcattcaagatagcctcta 30055983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 421
Target Start/End: Complemental strand, 30072342 - 30072247
Alignment:
Q  323 gatattatgcatttatgtact-actttaaataagtagcggtctttgtttccgactaaataattgggtttcttaatctccatccaaatttcaataatgatg 421  Q
    ||||| |||||| |||||||| |||||||||| ||||   |||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||    
T  30072342 gatatcatgcatctatgtacttactttaaata-gtag---tctttgtttcctgctaaataattgggtttcttaacatccatccaaatttcaataatgatg 30072247  T

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Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 30135765 - 30135720
Alignment:
Q  376 taaataattgggtttcttaatctccatccaaatttcaataatgatg 421  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30135765 taaataattgggtttcttaatatccatccaaatttcaataatgatg 30135720  T

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Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 30141894 - 30141849
Alignment:
Q  376 taaataattgggtttcttaatctccatccaaatttcaataatgatg 421  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30141894 taaataattgggtttcttaatatccatccaaatttcaataatgatg 30141849  T

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Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 30145316 - 30145271
Alignment:
Q  376 taaataattgggtttcttaatctccatccaaatttcaataatgatg 421  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  30145316 taaataattgggtttcttaatatccatccaaatttcaataatgatg 30145271  T

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Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 30462971 - 30463086
Alignment:
Q  212 aatatggcttgtgtttcccctctgtctctgaagcagtaaacgcattcaagatggcctctagcttgaaattcgnnnnnnncttcttgaagatgtctcttcc 311  Q
    |||||||||| |||||  |||||||||||||||||  | |||||| |||||||||||||| ||  || |||        |||||||||||||||||||||    
T  30462971 aatatggcttctgttttgcctctgtctctgaagcacaagacgcatacaagatggcctctacctataagttcaagaaagacttcttgaagatgtctcttcc 30463070  T
Q  312 tgcttaatatcgatat 327  Q
     ||||||||| |||||    
T  30463071 cgcttaatattgatat 30463086  T

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Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 30079763 - 30079714
Alignment:
Q  158 ctgaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaat 207  Q
    ||||||||||||| || |||||||| |||| |||||||||||||||||||    
T  30079763 ctgaatgcacaaagaaaggtagtgggaatttttgtgctcgttttcctaat 30079714  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 30172022 - 30171975
Alignment:
Q  160 gaatgcacaaaaaagggtagtggcaattattgtgctcgttttcctaat 207  Q
    ||||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  30172022 gaatgcacaaagaagtgtagtgggaattattgtcctcgttttcctaat 30171975  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 421
Target Start/End: Original strand, 30463139 - 30463184
Alignment:
Q  376 taaataattgggtttcttaatctccatccaaatttcaataatgatg 421  Q
    ||||||| | || |||||||| ||||||||||||||||||||||||    
T  30463139 taaataaataggcttcttaatttccatccaaatttcaataatgatg 30463184  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 30173166 - 30173130
Alignment:
Q  291 cttcttgaagatgtctcttcctgcttaatatcgatat 327  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  30173166 cttcttgaagatgtctgttcctgcttaatatcaatat 30173130  T

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