View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_high_15 (Length: 395)
Name: NF3913_high_15
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 9146776 - 9146407
Alignment:
| Q |
17 |
acttccatccaacaaaacactaattaatgtccattcaaatattcattcattactcagagattgtttcccctcaattatttcatagattttcaattatttc |
116 |
Q |
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|||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||| |
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| T |
9146776 |
acttccgtccaacaaaacactgattaatgtccattccaatattcattcattactcacagactgtttcctctcaattatttcacagattttcaattatttc |
9146677 |
T |
|
| Q |
117 |
acagactggttcctcaaaattcattaattttccttgttcattcatagactgtttcccctcaattatttcacagattttcaatctgatatatnnnnnnnct |
216 |
Q |
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|||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9146676 |
acagactgcttcttctcaattcattcattttccttgttcattcatagactgtttcccctcaattatttcacagattttcaatctgatatataaaaaaact |
9146577 |
T |
|
| Q |
217 |
aatggttgattttgttgtgcccattcaaaatcgttgaacctctctgtctctcaccttcgatttctttttagtaaaaagctctctttgatttcttttttag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9146576 |
aatggttgattttgttgtgcccattcaaaatcgttgaacctctctgtctctcaccttcgatttctttttagtaaaaagctctctttgatttcttttttag |
9146477 |
T |
|
| Q |
317 |
tgttcgtagaactcagattcaagaattagggatttaaagctctttgtctctcacctctattccttcatctc |
387 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |
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| T |
9146476 |
tgttcgtagaactcagattcaagaattagggattt-aatctctttgtatctcacctctattccttcatctc |
9146407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 37916115 - 37915751
Alignment:
| Q |
17 |
acttccatccaacaaaacactaattaatgtccattcaaatattcattcattactcagagattgtttcccctcaattatttcatagattttcaattatttc |
116 |
Q |
| |
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|||||| ||||||| ||||||||||||| || ||||||||||||||||||| ||| | ||||| ||||||||||||| |||| |||||||||||| |
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| T |
37916115 |
acttccgtccaacagaacactaattaat------tccaatattcattcattactcacagactatttcctctcaattatttcacagatcttcaattatttc |
37916022 |
T |
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| Q |
117 |
acagactggttcctcaaaattcattaattttccttgttcattcatagactgtttcccctcaattatttcacagattttcaatctgatatatnnnnnnnct |
216 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
37916021 |
acagactgcttcctctcaattcattcattttccttgttcatttatagactgtttcccatcaattatttcacagattttcaatctgatatataaaaaaact |
37915922 |
T |
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| Q |
217 |
aatggttgattttgttgtgcccattcaaaatcgttgaacctctctgtctctcaccttcgatttctttttagtaaaaagctctctttgatttcttttttag |
316 |
Q |
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|||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915921 |
aatggttgattttgttgtgcgcattcaaaattgatgaacctctctgtctctcaccttcgatttctttttagtaaaaagctctctttgatttcttttttag |
37915822 |
T |
|
| Q |
317 |
tgttcgtagaactcagattcaagaattagggatttaaagctctttgtctctcacctctattccttcatctc |
387 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |
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| T |
37915821 |
tgttcgtagaactcagattcaagaattagggatttaaagttctttatctctcgcctctattccttcatctc |
37915751 |
T |
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