View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_high_16 (Length: 394)
Name: NF3913_high_16
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 63 - 381
Target Start/End: Original strand, 47457055 - 47457392
Alignment:
| Q |
63 |
attaagtataatctaatgatttggaaatcctatctatttttatataggatttgcaaatt-------------------attttctattctgtagttttta |
143 |
Q |
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| T |
47457055 |
attaagtataatctaatgatttggaaatcctatctatttttatataggatttgcaaattatttagtttctgaataattattttctattctgtagttttta |
47457154 |
T |
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| Q |
144 |
agtgttccaatttccaaacaagatgatttgtgttgcaaaatttatgtctcatgctgcataaaacattgtcaagtatgcagttgtaggacttttcagtttt |
243 |
Q |
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| T |
47457155 |
agtgttccaatttccaaacaagatgatttgtgttgcaaaatttatgtctcatgttgcataaaacattgtcaagtatgcagttgtaggactttcaagtttt |
47457254 |
T |
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| Q |
244 |
tggtcaaaataaaatattactagcttatacatccttttgtagaccacgcaatgcttgtatgaatgggaatgaccaatgcaatctctagagaagttttgat |
343 |
Q |
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| T |
47457255 |
tggtcaaaataaaatattactagcttatacatccttttgtagaccacgcaatgcttgtatgaatgggaatgaccaatgcaatctctagagaagttttgat |
47457354 |
T |
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| Q |
344 |
caataacactattggattattggttatacttatatgtg |
381 |
Q |
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| T |
47457355 |
caataacactattggattattggttatacttatatgtg |
47457392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47455381 - 47455309
Alignment:
| Q |
1 |
tcatcagggatagctccaagtgtttccatttttcttggaagtcttctaagaggaaaagggctattaagtataa |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47455381 |
tcatcagggatagctccaagtgtttccatttttcttggaagtcttctaagaggaaaagggctattaagtataa |
47455309 |
T |
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