View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_high_17 (Length: 391)

Name: NF3913_high_17
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_high_17
NF3913_high_17
[»] chr6 (6 HSPs)
chr6 (241-384)||(34040510-34040653)
chr6 (17-132)||(34040295-34040411)
chr6 (192-243)||(30704886-30704937)
chr6 (143-187)||(34040469-34040513)
chr6 (192-242)||(14218355-14218405)
chr6 (192-234)||(5309552-5309594)
[»] chr8 (8 HSPs)
chr8 (192-246)||(44501870-44501924)
chr8 (192-242)||(12773128-12773178)
chr8 (192-242)||(35215800-35215850)
chr8 (197-245)||(9314355-9314403)
chr8 (192-244)||(23718021-23718073)
chr8 (192-243)||(16727899-16727950)
chr8 (192-243)||(32743000-32743051)
chr8 (192-243)||(38222553-38222604)
[»] chr3 (8 HSPs)
chr3 (189-243)||(10542138-10542192)
chr3 (192-244)||(38518944-38518996)
chr3 (192-243)||(44554082-44554133)
chr3 (192-242)||(3863122-3863172)
chr3 (192-237)||(20394279-20394324)
chr3 (192-245)||(28393038-28393091)
chr3 (192-243)||(27645180-27645231)
chr3 (192-242)||(34944959-34945009)
[»] chr1 (7 HSPs)
chr1 (192-246)||(41773293-41773347)
chr1 (192-242)||(7390854-7390904)
chr1 (192-245)||(29658151-29658204)
chr1 (192-243)||(8362835-8362886)
chr1 (192-243)||(16642606-16642657)
chr1 (192-245)||(29649746-29649799)
chr1 (192-230)||(22147089-22147127)
[»] chr7 (8 HSPs)
chr7 (192-245)||(43315008-43315061)
chr7 (192-243)||(10901939-10901990)
chr7 (192-242)||(334954-335004)
chr7 (192-242)||(25518557-25518607)
chr7 (192-248)||(13618644-13618700)
chr7 (192-239)||(32591789-32591836)
chr7 (192-242)||(10269989-10270039)
chr7 (192-244)||(11805912-11805964)
[»] scaffold0009 (1 HSPs)
scaffold0009 (192-243)||(16025-16076)
[»] chr4 (10 HSPs)
chr4 (192-243)||(10484837-10484888)
chr4 (192-243)||(14676523-14676574)
chr4 (194-245)||(21395088-21395139)
chr4 (192-242)||(1086374-1086424)
chr4 (192-242)||(5925942-5925992)
chr4 (192-243)||(17196159-17196210)
chr4 (192-242)||(49550876-49550926)
chr4 (192-242)||(27183133-27183184)
chr4 (192-239)||(45117601-45117648)
chr4 (192-234)||(15055914-15055956)
[»] chr5 (7 HSPs)
chr5 (192-246)||(3614669-3614723)
chr5 (192-242)||(43487457-43487507)
chr5 (192-244)||(2026062-2026114)
chr5 (192-248)||(23415044-23415100)
chr5 (192-242)||(37828478-37828528)
chr5 (192-242)||(37039541-37039591)
chr5 (192-234)||(18003796-18003838)
[»] chr2 (6 HSPs)
chr2 (192-243)||(3534282-3534333)
chr2 (192-242)||(12532343-12532393)
chr2 (192-246)||(30123818-30123872)
chr2 (197-242)||(2272017-2272062)
chr2 (192-242)||(7357295-7357345)
chr2 (192-234)||(43380377-43380419)
[»] scaffold0129 (1 HSPs)
scaffold0129 (192-242)||(39851-39901)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 8e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 241 - 384
Target Start/End: Original strand, 34040510 - 34040653
Alignment:
Q  241 tatatgttgaattgcataaccattttcacaactagtagaacactatatctcctttgtcaaacaagaaaaaagaacattatgtctccattaatcacgcatg 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34040510 tatatgttgaattgcataaccattttcacaactagtagaacactatgtctcctttgtcaaacaagaaaaaagaacattatgtctccattaatcacgcatg 34040609  T
Q  341 tcatcaccatggtcatataacgaccatacccattcttcatctct 384  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  34040610 tcatcaccatggtcatataacgaccaaacccattcttcatctct 34040653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 34040295 - 34040411
Alignment:
Q  17 agcagctaggagagtgaattttactctaacttccatatacaactttagatcaatggctagtatt-atcttggtccaagtttgaccaatcttctcattggt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  34040295 agcagctaggagagtgaattttactctaacttccatatacaactttagatcaatggctagtattaatcttggttcaagttggaccaatcttctcattggt 34040394  T
Q  116 acaaattatacggaacc 132  Q
    |||||||||||| ||||    
T  34040395 acaaattatacgcaacc 34040411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 30704886 - 30704937
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30704886 taataaatttctccggtcccgacattattaatttatagagtttctactgtat 30704937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 34040469 - 34040513
Alignment:
Q  143 aacctttctaaggaataatctttttcttttaacaaaagatatata 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34040469 aacctttctaaggaataatctttttcttttaacaaaagatatata 34040513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 14218405 - 14218355
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    |||||||||| ||||||||| || ||||||||||||||||||| |||||||    
T  14218405 taataaatttttccggtcccaacattattaatttatagagtttatactgta 14218355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 5309552 - 5309594
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagttt 234  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||    
T  5309552 taataaatttctccgatcctgacattattaatttatagagttt 5309594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 44501870 - 44501924
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatatg 246  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44501870 taataaatttctccggtcccgacattattaatttatagagtttctactgtatatg 44501924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 12773178 - 12773128
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12773178 taataaatttctccggtcccgacattattaatttatagagtttctactgta 12773128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 35215850 - 35215800
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35215850 taataaatttctccggtcccgacattattaatttatagagtttctactgta 35215800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 9314355 - 9314403
Alignment:
Q  197 aatttctccggtcccgacgttattaatttatagagtttctactgtatat 245  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9314355 aatttctccggtcccgacattattaatttatagagtttctactgtatat 9314403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 23718021 - 23718073
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtata 244  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  23718021 taataaatttctccggtcccaacattattaatttatagagtttctactgtata 23718073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 16727899 - 16727950
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  16727899 taataaatttctctggtcccgacattattaatttatagagtttctactgtat 16727950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 32743000 - 32743051
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  32743000 taataaatttctccggtcccgatattattaatttatagagtttctactgtat 32743051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 38222604 - 38222553
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  38222604 taataaatttctccggtcccgacattattaatttatagagtttatactgtat 38222553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 10542192 - 10542138
Alignment:
Q  189 aactaataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10542192 aactaataaatttctccggtcccgacattattaatttatagagtttctactgtat 10542138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 38518944 - 38518996
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtata 244  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38518944 taataaatttctccggtcccgacattattaatttatagagtttctactgtata 38518996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 44554082 - 44554133
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44554082 taataaatttctccggtcccgacattattaatttatagagtttctactgtat 44554133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 3863172 - 3863122
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  3863172 taataaatttctccgatcccgacattattaatttatagagtttctactgta 3863122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 20394324 - 20394279
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttcta 237  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  20394324 taataaatttctccggtcccgacattattaatttatagagtttcta 20394279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 28393038 - 28393091
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatat 245  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  28393038 taataaatttatccggtcctgacattattaatttatagagtttctactgtatat 28393091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 27645180 - 27645231
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||| |||| || |||||||||||||||||||||| |||||    
T  27645180 taataaatttctccgatcccaacattattaatttatagagtttctattgtat 27645231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 34945009 - 34944959
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||  ||| ||||||| |||||||||||||||| ||||||||||    
T  34945009 taataaattttcccgatcccgacattattaatttatagagattctactgta 34944959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 41773347 - 41773293
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatatg 246  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41773347 taataaatttctccggtcccgacattattaatttatagagtttctactgtatatg 41773293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 7390904 - 7390854
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7390904 taataaatttctccggtcccgacattattaatttatagagtttctactgta 7390854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 29658204 - 29658151
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatat 245  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  29658204 taataaatttctccggtcccgacattattaatttaaagagtttctactgtatat 29658151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 8362886 - 8362835
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  8362886 taataaatttctccgatcctgacattattaatttatagagtttctactgtat 8362835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 16642606 - 16642657
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  16642606 taataaatttctccgatcccgacattattaatttatagaatttctactgtat 16642657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 29649799 - 29649746
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatat 245  Q
    ||||||||||||||| | || || ||||||||||||||||||||||||||||||    
T  29649799 taataaatttctccgattccaacattattaatttatagagtttctactgtatat 29649746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 22147089 - 22147127
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttataga 230  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  22147089 taataaatttctccgatcccgacattattaatttataga 22147127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 43315008 - 43315061
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatat 245  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43315008 taataaatttctccggtcccgacattattaatttatagagtttctactgtatat 43315061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 10901990 - 10901939
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10901990 taataaatttctccggtcccgacattattaatttatagagtttctactgtat 10901939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 335004 - 334954
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  335004 taataaatttctccggtcccgacattattaatttatagagtttctactgta 334954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 25518607 - 25518557
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25518607 taataaatttctccggtcccgacattattaatttatagagtttctactgta 25518557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 13618700 - 13618644
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatatgtt 248  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  13618700 taataaatttctctggtcccgacattattaatttatagagtttctactgtacatgtt 13618644  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 32591836 - 32591789
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctact 239  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  32591836 taataaatttctccgatcccgacattattaatttatagagtttctact 32591789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 10269989 - 10270039
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  10269989 taataaatttctccaatcccgacattattaatttatagagtttctactgta 10270039  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 11805964 - 11805912
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtata 244  Q
    ||||||||||||||||||  ||| ||||||||| |||||||||  ||||||||    
T  11805964 taataaatttctccggtcttgacattattaattcatagagttttaactgtata 11805912  T

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Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 16025 - 16076
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16025 taataaatttctccggtcccgacattattaatttatagagtttctactgtat 16076  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 10484888 - 10484837
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10484888 taataaatttctccggtcccgacattattaatttatagagtttctactgtat 10484837  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 14676574 - 14676523
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14676574 taataaatttctccggtcccgacattattaatttatagagtttctactgtat 14676523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 21395139 - 21395088
Alignment:
Q  194 ataaatttctccggtcccgacgttattaatttatagagtttctactgtatat 245  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21395139 ataaatttctccggtcccgacattattaatttatagagtttctactgtatat 21395088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 1086374 - 1086424
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1086374 taataaatttctccggtcccgacattattaatttatagagtttctactgta 1086424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 5925992 - 5925942
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5925992 taataaatttctccggtcccgacattattaatttatagagtttctactgta 5925942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 17196159 - 17196210
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  17196159 taataaatttctccggtcccgacattattaatttatagagtttctaccgtat 17196210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 49550876 - 49550926
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  49550876 taataaatttctccgatcccgacattattaatttatagagtttctactgta 49550926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 27183133 - 27183184
Alignment:
Q  192 taataaatttctcc-ggtcccgacgttattaatttatagagtttctactgta 242  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  27183133 taataaatttctcccggtcccgacattattaatttatagagtttctactgta 27183184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 45117648 - 45117601
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctact 239  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||    
T  45117648 taataaatttctccggtcccaacattattaatttatagagtttctact 45117601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 15055956 - 15055914
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagttt 234  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  15055956 taataaatttctccggtcctgacattattaatttatagagttt 15055914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 3614723 - 3614669
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatatg 246  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  3614723 taataaatttctccggtcccgacattattaatttaaagagtttctactgtatatg 3614669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 43487507 - 43487457
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43487507 taataaatttctccggtcccgacattattaatttatagagtttctactgta 43487457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 2026114 - 2026062
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtata 244  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  2026114 taataaatttctccgatcccgacattattaatttatagagtttctactgtata 2026062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 23415100 - 23415044
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatatgtt 248  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  23415100 taataaatttctctggtcccgacattattaatttatagagtttctactgtacatgtt 23415044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 37828478 - 37828528
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  37828478 taataaatttctccggtcccgacattattaatttatagagtttatactgta 37828528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 37039541 - 37039591
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  37039541 taataaatttctccggtcccgatattattaatttataaagtttctactgta 37039591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 18003796 - 18003838
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagttt 234  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  18003796 taataaatttctccggtcctgacattattaatttatagagttt 18003838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 3534333 - 3534282
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtat 243  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  3534333 taataaatttctccggtcccgacattattaatttaaagagtttctactgtat 3534282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 12532393 - 12532343
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  12532393 taataaatttctccggtcctgacattattaatttatagagtttctactgta 12532343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 30123818 - 30123872
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgtatatg 246  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  30123818 taataaatttctccaatcccgacattattaatttatagagtttctactgtatatg 30123872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 2272062 - 2272017
Alignment:
Q  197 aatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||| || |||||||||||||||||||||||||||    
T  2272062 aatttctccggtcccaacattattaatttatagagtttctactgta 2272017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 7357295 - 7357345
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    ||||||||||||||| |||| || ||||||||||||||||||||| |||||    
T  7357295 taataaatttctccgatcccaacattattaatttatagagtttcttctgta 7357345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 43380377 - 43380419
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagttt 234  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||    
T  43380377 taataaatttctccgatcctgacattattaatttatagagttt 43380419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 39851 - 39901
Alignment:
Q  192 taataaatttctccggtcccgacgttattaatttatagagtttctactgta 242  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  39851 taataaatttctccggtcccaacattattaatttatagagtttctactgta 39901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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