View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_high_20 (Length: 382)

Name: NF3913_high_20
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_high_20
NF3913_high_20
[»] chr4 (1 HSPs)
chr4 (17-368)||(52071686-52072037)
[»] chr8 (4 HSPs)
chr8 (58-126)||(9621943-9622011)
chr8 (64-123)||(7195365-7195424)
chr8 (80-126)||(5843130-5843176)
chr8 (80-126)||(5849872-5849918)
[»] chr7 (1 HSPs)
chr7 (35-126)||(48892585-48892676)
[»] chr1 (2 HSPs)
chr1 (65-140)||(16127400-16127475)
chr1 (65-139)||(16138910-16138984)
[»] chr5 (1 HSPs)
chr5 (72-126)||(1319331-1319385)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 52071686 - 52072037
Alignment:
Q  17 agtttgtgaagtcggatgataagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaacttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52071686 agtttgtgaagtcggatgataagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaacttt 52071785  T
Q  117 ttccacatcttcttaaacctgcatggcataaatatatttacaaaaacatgaaggnnnnnnntataagcaaacaaaagtgtgtcattgatgatctatgtaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||    
T  52071786 ttccacatcttcttaaacctgcatggcataaatatatttacaaaaacatgaaggaaaaaaatataagcaaacaaaagtgcgtcattgatgatctatgtaa 52071885  T
Q  217 gaagatacataattaatgaacctgctcttttgggaaggtttctccattttccttcaccatggagcttaatgtagtctgagagaattttgtcttcatgagc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52071886 gaagatacataattaatgaacctgctcttttgggaaggtttctccattttccttcaccatggagcttaatgtagtctgagagaattttgtcttcatgagc 52071985  T
Q  317 tgtccaagcacctctgttcaatccctcctttgcacaacaaggacttctcccc 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52071986 tgtccaagcacctctgttcaatccctcctttgcacaacaaggacttctcccc 52072037  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 9622011 - 9621943
Alignment:
Q  58 tatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatct 126  Q
    |||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  9622011 tatgttacctctctttatatctggtctaagataattcatccatctaagtctacaacttttcccacatct 9621943  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 7195424 - 7195365
Alignment:
Q  64 gcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccaca 123  Q
    ||||||||| ||| ||||| | |||||||||||||||||  |||||||||||||||||||    
T  7195424 gcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca 7195365  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 5843130 - 5843176
Alignment:
Q  80 ggtcttagataattcaaccatctaagtctacaactttttccacatct 126  Q
    |||||||||||||| | |||||| | |||||||||||||||||||||    
T  5843130 ggtcttagataatttatccatcttaatctacaactttttccacatct 5843176  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 5849872 - 5849918
Alignment:
Q  80 ggtcttagataattcaaccatctaagtctacaactttttccacatct 126  Q
    |||||||||||||| | |||||| | |||||||||||||||||||||    
T  5849872 ggtcttagataatttatccatcttaatctacaactttttccacatct 5849918  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 48892585 - 48892676
Alignment:
Q  35 ataagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatct 126  Q
    |||||||| ||||| ||||  | |||||| |||||||| ||||||||||||||||| |||| |||||| ||||| |||||||||||||||||    
T  48892585 ataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct 48892676  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 16127400 - 16127475
Alignment:
Q  65 cctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacctgcat 140  Q
    |||||||||||||| | ||||| |||||| | |||||| | ||||||||| ||||||||||||  |||||||||||    
T  16127400 cctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccacatcttaataaacctgcat 16127475  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 16138910 - 16138984
Alignment:
Q  65 cctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacctgca 139  Q
    |||||||||||||| ||| ||| ||| || | |||||| | ||||||||| ||||||||||||  ||||||||||    
T  16138910 cctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatcttaataaacctgca 16138984  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 1319331 - 1319385
Alignment:
Q  72 taatatctggtcttagataattcaaccatctaagtctacaactttttccacatct 126  Q
    ||||||| || |||||||||||   |||||||||||||||||| |||||||||||    
T  1319331 taatatcaggccttagataattattccatctaagtctacaactctttccacatct 1319385  T

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