View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3913_high_21 (Length: 379)
Name: NF3913_high_21
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_21 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 40723005 - 40723357
Alignment:
| Q |
11 |
cagagaataaggatgattgcagcagtgaaggtt-ctgccaacatggttcaattttttcacaagtaatatttgcattccttctactcatttggtttacact |
109 |
Q |
| |
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||||||| ||||||| ||||||||||||||||| ||||| |||||||| |||||||||||| ||||||||| |||||||||| |||||| ||||||||| |
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|
| T |
40723005 |
cagagaagaaggatggttgcagcagtgaaggtttctgccgacatggtttaattttttcacaggtaatatttacattccttcttctcattcggtttacacg |
40723104 |
T |
|
| Q |
110 |
ttctcttaatttattattgtacatgtttcaattttgttatgcatcttattattttgttgggttannnnnnnnattaaagtggtgattattttgtcttt-a |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| | |||||||| |||||||| |||||||||||||||||||||||||| | |
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| T |
40723105 |
ttctcctaatttattattgtacatgtttcaattttattctgcatttgattatttttttgggttattttttttattaaagtggtgattattttgtctttca |
40723204 |
T |
|
| Q |
209 |
aggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaattttgtgtttgataatatatggaggaattgatagaga |
308 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723205 |
aggttcagattaaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaattttgtgtttgataatatatggaggaattgatagaga |
40723304 |
T |
|
| Q |
309 |
tatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtg |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40723305 |
tatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtg |
40723357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 11637678 - 11637602
Alignment:
| Q |
9 |
agcagagaataaggatgattgcagcagtgaaggttctgccaacatggttcaattttttcacaagtaatatttgcatt |
85 |
Q |
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||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||| |
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|
| T |
11637678 |
agcagagaagaaggatgattgcagcagtgaaggttacgccgacatggttcaattttttcacaggtaatatttacatt |
11637602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 952472 - 952126
Alignment:
| Q |
19 |
aaggatgattgcagcagtgaaggttctgccaacatggttcaattttttcacaagtaatatttgcattccttctactcatttggtttacactttctcttaa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||| ||| |
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|
| T |
952472 |
aaggatgattgcagcagtgaagattccgccgacatggttcaatcttttcacaggtaatatttacattccttcttctcatttggtttacactttctcctaa |
952373 |
T |
|
| Q |
119 |
tttattattgtacatgtttcaattttgttatgcatcttattattttgttgggttannnnnnnnattaaagtggtgattatt---ttgtcttt-aaggttc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||| |||||||| |||||| |
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|
| T |
952372 |
tttattattgtacatgtttcaattttgttctgcatctgattatttttttgggttattttttttattaaagtggtgattattattttgtctttcaaggtta |
952273 |
T |
|
| Q |
215 |
agattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaattttgtgtttgataatatatggaggaattgatagagatatctg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
952272 |
agattcaaaaaattggaaaaatcaacggaggttaggatttttgagtttgatatgtaattttgtgtttgataatatatggaggaattgatagagatatctg |
952173 |
T |
|
| Q |
315 |
agaaaggaagttacaagggcaattagagactctttttctttgttgtg |
361 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
952172 |
ataaaggaaattacaagggcaattagagactctttttctatgttgtg |
952126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 192 - 361
Target Start/End: Complemental strand, 14174936 - 14174766
Alignment:
| Q |
192 |
tgattattttgtcttt-aaggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaattttgtgtttgataatata |
290 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14174936 |
tgattattttgtctttcaaggttcagattcaaaaaattgtaaaaatcaacggaggttaggatttgtgagtttgatatgtaattttgtgtttgataatata |
14174837 |
T |
|
| Q |
291 |
tggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtg |
361 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14174836 |
tggacgaattgatagacatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtg |
14174766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 14175036 - 14174936
Alignment:
| Q |
11 |
cagagaataaggatgattgcagcagtgaaggttctgccaacatggttcaattttttcacaagtaatatttgcattccttctactcatttggtttacactt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | | ||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
14175036 |
cagagaagaaggatgattgcagcagtgaaggttccgtcgacatggttcaattttttcacaggtaatatttacattccttcttctcatttggtttacactt |
14174937 |
T |
|
| Q |
111 |
t |
111 |
Q |
| |
|
| |
|
|
| T |
14174936 |
t |
14174936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 257972 - 258312
Alignment:
| Q |
11 |
cagagaataaggatgattgcagcagtgaaggttctgccaacatggttcaattttttcacaagtaatatttgcattccttctactcatttggtttacactt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||||| || |||||| |||||||||| ||||||| |||||||||| |
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|
| T |
257972 |
cagagaagaaggatgattgcagcagtgaaggttccgccgacatggtttaattttttcacaggtgatatttacattccttcttctcatttagtttacactt |
258071 |
T |
|
| Q |
111 |
tctcttaatttattattgtacatgtttcaattttgttatgcatcttattattttgttgggttannnnnnnnattaaagtggtgat--tattttgtcttt- |
207 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || ||||||| |||||||| || |||||||||||||| ||||| |||||| |
|
|
| T |
258072 |
tctcctaatttattattgtacatgtttcaattttattctgcatctgattattttttt-------------tattaaagtggtgatattatttcgtctttc |
258158 |
T |
|
| Q |
208 |
aaggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaattttgtgtttgataatatatggaggaattgatagag |
307 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
258159 |
aaggttcagattaaaaaatttggaaaaatcaacggaggttaggatttatgagtttgatatgtaattttgtgtttgataatatatggaggaattgatagag |
258258 |
T |
|
| Q |
308 |
atatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtg |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
258259 |
atatctgagaaaggaagttacaagggaaattagagactctttttctttgttgtg |
258312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 52 - 361
Target Start/End: Complemental strand, 10714959 - 10714662
Alignment:
| Q |
52 |
atggttcaattttttcacaagtaatatttgcattccttctactcatttggtttacactttctcttaatttattattgtacatgtttcaattttgttatgc |
151 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10714959 |
atggttcaattttttcaca-gtaatatttacattcctttttctcatttggtttacactttctcctaatttattattgtacatgtttcaattttgttctgc |
10714861 |
T |
|
| Q |
152 |
atcttattattttgttgggttannnnnnnnattaaagtggtgattattttgtcttt-aaggttcagattcaaaaaattggaaaaatcaacggaggttagg |
250 |
Q |
| |
|
|||| |||||||| || ||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
10714860 |
atctgattattttttt---tta---------ttaaagtggtgattattttgtctttcaaggttcatattcaaaaaattggaaaaatcaatggaggttagg |
10714773 |
T |
|
| Q |
251 |
atttgtgagtttgatatgtaattttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10714772 |
atttgtgagtttgatatgtaattttggttttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttt |
10714673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 52 - 361
Target Start/End: Complemental strand, 10928729 - 10928432
Alignment:
| Q |
52 |
atggttcaattttttcacaagtaatatttgcattccttctactcatttggtttacactttctcttaatttattattgtacatgtttcaattttgttatgc |
151 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10928729 |
atggttcaattttttcaca-gtaatatttacattcctttttctcatttggtttacactttctcctaatttattattgtacatgtttcaattttgttctgc |
10928631 |
T |
|
| Q |
152 |
atcttattattttgttgggttannnnnnnnattaaagtggtgattattttgtcttt-aaggttcagattcaaaaaattggaaaaatcaacggaggttagg |
250 |
Q |
| |
|
|||| |||||||| || ||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
10928630 |
atctgattattttttt---tta---------ttaaagtggtgattattttgtctttcaaggttcatattcaaaaaattggaaaaatcaatggaggttagg |
10928543 |
T |
|
| Q |
251 |
atttgtgagtttgatatgtaattttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10928542 |
atttgtgagtttgatatgtaattttggttttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttt |
10928443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 8921988 - 8922087
Alignment:
| Q |
262 |
tgatatgtaattttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttaca-agggcaattagagactctttttctttgttgt |
360 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| ||| |||||||| ||||| |
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|
| T |
8921988 |
tgatatgtaatt--gtgtttgataatatgtggaggaatggatagagatatctgagataggaagttacagagggcgattagacactgtttttcttcgttgt |
8922085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 51386857 - 51386767
Alignment:
| Q |
23 |
atgattgcagcagtgaaggttctgccaacatggttcaattttttcacaagtaatatttgcattccttctactcatttggtttacactttct |
113 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||||||||||| | ||||||||| ||||| |||| ||| |||||||||| |||||| |
|
|
| T |
51386857 |
atgattgcagcagtgaaggttccgccgacatcattcaattttttcataggtaatatttacattctttcttctcctttggtttaccctttct |
51386767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 51386557 - 51386496
Alignment:
| Q |
210 |
ggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaa |
271 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
51386557 |
ggttcagattcaaaaaattggacaaatcaacagaggttaggataagagagtttgatatgtaa |
51386496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 51386644 - 51386612
Alignment:
| Q |
115 |
ttaatttattattgtacatgtttcaattttgtt |
147 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
51386644 |
ttaatttattactgtacatgtttcaattttgtt |
51386612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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