View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_high_24 (Length: 363)
Name: NF3913_high_24
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 45656945 - 45656613
Alignment:
| Q |
14 |
atatgtatgtaagcccaatattcaattttaatgctgccatagtggcactatagcaccttagcatagcggaatttgaacaaaagttannnnnnnactatcc |
113 |
Q |
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| T |
45656945 |
atatgtatgtaagcccaatattcaatttgaatgctgccatagtggcactatagcaccgtagcatagcagaatttgaacaaaagttatttttttactatcc |
45656846 |
T |
|
| Q |
114 |
gctatttaccaacattgttgattgtttttcacgtaattttctgtgtcaaactcggttagatatttagttatagaatgatttgatagaattggtttaaggt |
213 |
Q |
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| T |
45656845 |
gctatttaccaacattgttgattgtttttcacgtaattttctgtgtcaaactcggttagatatttagttatagaatgatttgatagaattggtttaaggt |
45656746 |
T |
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| Q |
214 |
agttagaagatagtttatgattaggtgaaagttggttatgatagttagaagaatatgatacaattagagtataggatacaccttcatatagtgatctaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45656745 |
agttagaagatagtttatgattaggtgaaagttggttatgattgttagaagaatatgatacaattagagtataggatacaccttcatatagtgatctaag |
45656646 |
T |
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| Q |
314 |
tagctaagataactgtctatttatactgcctta |
346 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
45656645 |
tagctaagataactgtctatttatactgcctta |
45656613 |
T |
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