View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3913_high_26 (Length: 349)
Name: NF3913_high_26
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 340
Target Start/End: Complemental strand, 51547288 - 51546953
Alignment:
| Q |
6 |
gatctttgcttgataaccacgtgagagcatccattaaacgccggtttccatgtcctttagaagctcttacctcaggcttaggaaacattgacagagaatt |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51547288 |
gatctttgcttgataaccacatgagagcatccattaaacgccggtttccatgtcctttagaagctcttacctcaggcttaggaaacattgacagagaatt |
51547189 |
T |
|
| Q |
106 |
actaacatgcttgtaagtgttgatcactgaatcaactaaaacttgcttcagtgtacctgaagcagaatctaagctttctaaacatgtgtttttgttggta |
205 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51547188 |
actaacatgtttgtaagtgttgatcactgaatcaactaaaacttgcttcagtgtacctgaagcagaatctaagctttctaaacatgtgttcttgttggta |
51547089 |
T |
|
| Q |
206 |
agggctgcacttagataagttcttgcatcaactaactttctagattttgatgaacgaattccagacaatgatctttttag-tgaagataaggtagattgt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51547088 |
agggctgcacttagataagttcttgcatcaactaactttctagattttgatgaacgaattccagacaatgatctttttagttgaagataaggtagattgt |
51546989 |
T |
|
| Q |
305 |
tgaagttcttcgcaatcttgtatagctcctcctttg |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51546988 |
tgaagttcttcgcaatcttgtatagctcctcttttg |
51546953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 312
Target Start/End: Complemental strand, 19475032 - 19474877
Alignment:
| Q |
157 |
tgtacctgaagcagaatctaagctttctaaacatgtgtttttgttggtaagggctgcacttagataagttcttgcatcaactaactttctagattttgat |
256 |
Q |
| |
|
|||||| ||||||||||| | | ||||||||||||||||||||||| ||||||||||| || || |||| |||||| ||| ||||| || || |
|
|
| T |
19475032 |
tgtaccagaagcagaatcaagaccatctaaacatgtgtttttgttggttagggctgcactgaggtagattctagcatcagctatgtttcttttgttcgag |
19474933 |
T |
|
| Q |
257 |
gaacgaattccagacaatgatctttttagtgaagataaggtagattgttgaagttc |
312 |
Q |
| |
|
||||| ||||| || ||||||||||| | ||||| |||||| ||||| |||||||| |
|
|
| T |
19474932 |
gaacggattccggataatgatcttttcaatgaagttaaggttgattgatgaagttc |
19474877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University