View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_high_28 (Length: 323)
Name: NF3913_high_28
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 20917 - 21093
Alignment:
| Q |
18 |
catagtacgaagcagagaagtaaggtgagagacgtctggagaaagaggaggagtgaaggggtgtttgtcgtagtaagacgacaggaaggccctagttatg |
117 |
Q |
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| T |
20917 |
catagtacgaagcagagaagtaaggtgagagacgtctgaagaaagaggaggagtgaaggggtgtttgtcgtagtaagacgacaggaaggccctagttatg |
21016 |
T |
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| Q |
118 |
ggcaccaaaccctctgtagaagcagcc------atcggaatcggaggattggattatcagacagatctaaatcccac |
188 |
Q |
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| T |
21017 |
ggcaccaaaccctctgtagaagcagccatcggaatcggaatcggaggattggattatcagacagatctaaatcccac |
21093 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 21153 - 21214
Alignment:
| Q |
253 |
ctactcaaccccattcattgatccctctcgaatattcgcttcc-tttttattttattctctg |
313 |
Q |
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| T |
21153 |
ctactcaaccccattcattgatccctctcgaatattctcttcctttttttttttattctctg |
21214 |
T |
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