View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3913_high_35 (Length: 274)
Name: NF3913_high_35
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 3376870 - 3377122
Alignment:
| Q |
8 |
ggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgatgttaatgtc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3376870 |
ggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttctcttttgatgttaatgtc |
3376969 |
T |
|
| Q |
108 |
aatggccatgttgatccttcaaagactagcttcatggagaatgatgatggcattgatttacacaaaccaaagttggatcatatgattattgaggacggat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3376970 |
aatggccatgttgatccttcaaagactagcttcatggagaatgatgatggtattgatttacacaaaccaaagttggatcatatgattattgaggacggat |
3377069 |
T |
|
| Q |
208 |
caaatgacttaaatctcaatgttgaagttttaaattttgatgattgtaaagtg |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3377070 |
caaatgacttaaatctcaatgttgaagttttaaattttgatgattgtaaagtg |
3377122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 152 - 263
Target Start/End: Original strand, 21361616 - 21361727
Alignment:
| Q |
152 |
tgatggcattgatttacacaaaccaaagttggatcatatgattattgaggacggatcaaatgacttaaatctcaatgttgaagttttaaattttgatgat |
251 |
Q |
| |
|
||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21361616 |
tgatgacattgatttacacaaaccaaaggtgcatcatatgattattgaggacagatcaaatgacttaaatctcaatgttaaagttttaaattttgatgat |
21361715 |
T |
|
| Q |
252 |
tgtaaagtgatg |
263 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21361716 |
tgtaaagtgatg |
21361727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 45765487 - 45765335
Alignment:
| Q |
111 |
ggccatgttgatccttcaaagactagcttcatggagaatgatgatggcattgatttacacaaaccaaagttggatcatatgattattgaggacggatcaa |
210 |
Q |
| |
|
|||||| ||||||| | |||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45765487 |
ggccatattgatccgttaaagcctaatttcatggagaatgatgacgacattgatttacacaaaccaaagttggatcatatgattattgaaaacggatcaa |
45765388 |
T |
|
| Q |
211 |
atgacttaaatctcaatgttgaagttttaaa-ttttgatgattgtaaagtgatg |
263 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
45765387 |
atgacttaaatctgaa-gttgaagttttaaatttttggtgattgtaaagggatg |
45765335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 2372397 - 2372487
Alignment:
| Q |
15 |
atcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgatgttaatg |
105 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| |||||||||| ||| || ||||| || | ||| || ||||||||||| |||| |
|
|
| T |
2372397 |
atcaacacatgggaattaatggaaggtcttgaagatattagtccttttcgatcgccgaatcacttcaaaagcttttcttttgatgtcaatg |
2372487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University