View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_high_39 (Length: 258)
Name: NF3913_high_39
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 11592666 - 11592897
Alignment:
| Q |
19 |
gttgtgaacaacatgttccttaaacgtttgtcccatctctttccctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgct |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592666 |
gttgtgaacaacatgttctttaaacgtttgtcccatttctttgcctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgct |
11592765 |
T |
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| Q |
119 |
ttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11592766 |
ttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttct |
11592865 |
T |
|
| Q |
219 |
tatcaattgtttctgaagctttatcctttgct |
250 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
11592866 |
tatcaattgtttctgaggctttatcctttgct |
11592897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 11645453 - 11645222
Alignment:
| Q |
19 |
gttgtgaacaacatgttccttaaacgtttgtcccatctctttccctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgct |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645453 |
gttgtgaacaacatgttctttaaacgtttgtcccatttctttgcctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgct |
11645354 |
T |
|
| Q |
119 |
ttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11645353 |
ttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttct |
11645254 |
T |
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| Q |
219 |
tatcaattgtttctgaagctttatcctttgct |
250 |
Q |
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|||||||||||||||| ||||||||||||||| |
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| T |
11645253 |
tatcaattgtttctgaggctttatcctttgct |
11645222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 27 - 250
Target Start/End: Complemental strand, 37180940 - 37180716
Alignment:
| Q |
27 |
caacatgttccttaaacgtttgtcccatctctttc-cctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcat |
125 |
Q |
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||||||||||||| || ||||||||||| | ||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |
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| T |
37180940 |
caacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataaacatcattagctttatcat |
37180841 |
T |
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| Q |
126 |
aaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaat |
225 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37180840 |
aaactttctctttaacattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgcataaacaatatctctcttcttatcaat |
37180741 |
T |
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| Q |
226 |
tgtttctgaagctttatcctttgct |
250 |
Q |
| |
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||||| ||| ||||||||||||||| |
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| T |
37180740 |
tgtttatgaggctttatcctttgct |
37180716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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