View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_high_43 (Length: 238)

Name: NF3913_high_43
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_high_43
NF3913_high_43
[»] chr4 (2 HSPs)
chr4 (1-89)||(93446-93534)
chr4 (110-154)||(93549-93593)
[»] chr1 (1 HSPs)
chr1 (1-89)||(37156515-37156603)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 93446 - 93534
Alignment:
Q  1 ttttatttttcttccttaaactaatggttagtgattactcttattcataggagtcaaactcgggaactaatttaatcaatatattagca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93446 ttttatttttcttccttaaactaatggttagtgattactcttattcataggagtcaaactcgggaactaatttaatcaatatattagca 93534  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 93549 - 93593
Alignment:
Q  110 gcatgcacaagaggaaatcaatctcaaaacattgcttacatagga 154  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  93549 gcatgcacaagaggaaatcaatctcaaaacattgcttacaaagga 93593  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 37156515 - 37156603
Alignment:
Q  1 ttttatttttcttccttaaactaatggttagtgattactcttattcataggagtcaaactcgggaactaatttaatcaatatattagca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37156515 ttttatttttcttccttaaactaatggttagtgattactcttattcataggagtcaaactagggaactaatttaatcaatatattagca 37156603  T

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