View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_high_48 (Length: 225)
Name: NF3913_high_48
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 13333095 - 13333292
Alignment:
| Q |
17 |
ataattcatattttgtaactaatctatataataactaagaaaatattatatcaatagtcacactaacaaagtactggtgtgcatgcaaacaatattgttg |
116 |
Q |
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| T |
13333095 |
ataattcatattttgtaacttatctatataataattaagaaaatattatatcaatagtcacaccaacaaagtactggtgtgcatgcaaacaatattgttg |
13333194 |
T |
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| Q |
117 |
cattagttttaccaatattaataattattctgcnnnnnnncaaccttataaaatccaaatacaaaaagcctatatatagatggattaacccctttgct |
214 |
Q |
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| T |
13333195 |
cattagttttaccaatattaataattattctgcaaaaaaacaaccttataaaatccaaatacaaaaagcctatatatagatggattaacccctttgct |
13333292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 13308081 - 13308129
Alignment:
| Q |
166 |
aaaatccaaatacaaaaagcctatatatagatggattaacccctttgcta |
215 |
Q |
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|||||| |||||||||| ||||||||||||||||| ||| |||||||||| |
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| T |
13308081 |
aaaatcgaaatacaaaa-gcctatatatagatggactaatccctttgcta |
13308129 |
T |
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