View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_high_50 (Length: 224)
Name: NF3913_high_50
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 49525197 - 49525349
Alignment:
| Q |
1 |
tgacatgatgcca-taaggataacattttctttatcatactaaccgacaaaattagccttttaatcaattatattttttaattttcttcaacatcaaaga |
99 |
Q |
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| T |
49525197 |
tgacatgatgccaataaggataacattttctttatcatactaaccgacaaaattagccttttaatcaattatattttttaattttcttcaacatcaaaga |
49525296 |
T |
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| Q |
100 |
aaagaaggannnnnnnnnnggacaagagaaacgaaggaaatattgaaatccat |
152 |
Q |
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| T |
49525297 |
aaagaaggattttttttttggacaagagaaacgaatgaaaaattgaaatccat |
49525349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 49525362 - 49525397
Alignment:
| Q |
170 |
tcgacacaaaaaggtagagagagcaaaacagaggaa |
205 |
Q |
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| T |
49525362 |
tcgacacaaaaaggtagagagagcaaatcagaggaa |
49525397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 12470513 - 12470456
Alignment:
| Q |
17 |
ggataacattttctttatcatactaaccgacaaaattagccttttaatcaattatatt |
74 |
Q |
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| T |
12470513 |
ggataacattttctttatcatattaaatgacaaaattacccttttaatcaattatatt |
12470456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 42369136 - 42369186
Alignment:
| Q |
30 |
tttatcatactaaccgacaaaattagccttttaatcaattatattttttaa |
80 |
Q |
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| T |
42369136 |
tttatcatattaattgacaaaattatccttataatcaattatattttttaa |
42369186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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