View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_high_55 (Length: 207)
Name: NF3913_high_55
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 126657 - 126831
Alignment:
| Q |
18 |
accaatttctgttgaaatttcctgctcacttcttttgtcattctctcctttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaagga |
117 |
Q |
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| T |
126657 |
accaatttctgttgaaatttcctgctcacttcttttgtcattctctcctttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaagga |
126756 |
T |
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| Q |
118 |
tttgattttgattttttaactgtaaacatatttcaattacttttatgagtatttatgacatcttttcttcctatg |
192 |
Q |
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| T |
126757 |
tttgattttgattttttaactgcaaacatacttcaattacttttatgagtatttatgacatcttttcttcctatg |
126831 |
T |
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Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 33058342 - 33058512
Alignment:
| Q |
22 |
atttctgttgaaatttcctgctcacttcttttgtcattctctcctttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttg |
121 |
Q |
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|||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33058342 |
atttctgttgaaatttcctgctatcttcttttgtcattccctactttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttg |
33058441 |
T |
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| Q |
122 |
attttgattttttaactgtaaacatatttcaattacttttatgagtatttatgacatcttttcttcctatg |
192 |
Q |
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|||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33058442 |
attttgattttttaactgcaaacatgcttcagttacttttatgagtatttatgacatcttttcttcctatg |
33058512 |
T |
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