View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3913_high_6 (Length: 558)
Name: NF3913_high_6
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_6 |
 | |
|
| [»] scaffold0026 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 25802896 - 25803438
Alignment:
| Q |
1 |
taaggaatataaattaaatgtggnnnnnnnacataataaatagggtataaatggtactacctctattgctatatttaagagatttttggccaaaacacac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25802896 |
taaggaatataaattaaatgtggtttttttacataataaatagggtataaatggtactacctctattgctatatttaagagatttttggccaaaacacac |
25802995 |
T |
|
| Q |
101 |
gaattgagaaacacaaccacaaaggcaaaagatgaaaagtttgctagaaatccaaagagaaataagcacaaactgatcacatgcttcaaaatgcaaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25802996 |
gaattgagaaacacaaccacaaaggcaaaagatgaaaagtttgctaaaaatccaaagagaaataagcacaaactgatcacatgcttcaaaatgcaaactt |
25803095 |
T |
|
| Q |
201 |
atctgtcagaagtcagaactatctacaacataagtaatacaaagtgctgcccacaacacagtgaaaatacattctgaattgcataagtatagaaccaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25803096 |
atctgtcagaagtcagaactatctacaacataagtaatacaaagtgctgcccacaacacagtgaaaatacattctgaattgcataagtatagaaccaaat |
25803195 |
T |
|
| Q |
301 |
gctaaaacacgaacatactgaaactcagagtacaactataacaatgcagtatgcaaaagtatagctaatccatattagcaaatttgttgcaaagcacaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25803196 |
gctaaaacacgaacatactgaaactcagagtacaactacaacaatgcagtatgcaaaagtatagctaatccatattagcaaatttgttgcaaagcacaat |
25803295 |
T |
|
| Q |
401 |
gttttaccaaattatatcaaaataatcttcaaagcaaataagtagtatgatcaaattaatccccatttagttgcatacacacacaaacatttgccttatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25803296 |
gttttaccaaattatatcaaaataatcttcaaagcaaataagtagtatgatcaaattaatccccatttagttgcatacacacacaaacatttgccttatc |
25803395 |
T |
|
| Q |
501 |
ctagactcggtcacttaatgtagtatatgtaatactgcatact |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25803396 |
ctagactcggtcacttaatgtagtatatgtaatactgcatact |
25803438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 105564 - 105024
Alignment:
| Q |
1 |
taaggaatataaattaaatgtggnnnnnnnacataataaatagggtataaatggtactacctctattgctatatttaagagatttttggccaaaacacac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105564 |
taaggaatataaattaaatgtggtttttttacataataaatagggtataaatggtactacctctattgctatatttaagagatttttggccaaaacacac |
105465 |
T |
|
| Q |
101 |
gaattgagaaacacaaccacaaaggcaaaagatgaaaagtttgctagaaatccaaagagaaataagcacaaactgatcacatgcttcaaaatgcaaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105464 |
gaattgagaaacacaaccacaaaggcaaaagatgaaaagtttgctataaatccaaagagaaataagcacaaactgatcacatgcttcaaaatgcaaactt |
105365 |
T |
|
| Q |
201 |
atctgtcagaagtcagaactatctacaacataagtaatacaaagtgctgcccacaacacagtgaaaatacattctgaattgcataagtatagaaccaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
105364 |
atctgtcagaagtcagaactatctataacataagtaatacaaagtgctgcccacaacacaatgaaaatacattatgaattgcataagtatagaaccaaat |
105265 |
T |
|
| Q |
301 |
gctaaaacacgaacatactgaaactcagagtacaactataacaatgcagtatgcaaaagtatagctaatccatattagcaaatttgttgcaaagcacaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
105264 |
gctaaaacacgaacatactgaaactcagagtacaactacaacaatgcagtatgcaaaagtatagctaatccatattagcaaatttgtagcaaagcacaat |
105165 |
T |
|
| Q |
401 |
gttttaccaaattatatcaaaataatcttcaaagcaaataagtagtatgatcaaattaatccccatttagttgcatacacacacaaacatttgccttatc |
500 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
105164 |
gttttaccaaattatatcaaaaaaatcttcaaagcaaataagtagtatgatcaaattaatccccatttagttgcataca--cacaaacatttgccttatc |
105067 |
T |
|
| Q |
501 |
ctagactcggtcacttaatgtagtatatgtaatactgcatact |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105066 |
ctagactcggtcacttaatgtagtatatgtaatactgcatact |
105024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 331 - 521
Target Start/End: Original strand, 43697603 - 43697799
Alignment:
| Q |
331 |
tacaactataacaatgcagtatgcaaaagtatagctaatccatattagcaaatttgtt--gcaaagcacaatgttttaccaaattatatcaaaataatct |
428 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| | |
|
|
| T |
43697603 |
tacaacaataacaatgcagaatgcataagtatagctattccatattagcaaatttgttatgcaaagcacaatcttttaacaaattatatcaaaataattt |
43697702 |
T |
|
| Q |
429 |
tcaaagcaaataagtagtatgatcaaattaatccccatttag----ttgcatacacacacaaacatttgccttatcctagactcggtcacttaatgt |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | || | ||||||||| |||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
43697703 |
tcaaagcaaataagtagtatgatcaaattaatccccaatcagtagctagcatacacaaacaaacattttccttatcctagactcggccacttgatgt |
43697799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University