View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3913_high_9 (Length: 464)
Name: NF3913_high_9
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_high_9 |
 | |
|
| [»] scaffold0760 (1 HSPs) |
| | |
|
| [»] scaffold1004 (1 HSPs) |
| | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 24417986 - 24418362
Alignment:
| Q |
15 |
caaaggatgccgttgcaagagcacacgcgataaggctgactttttccaattttgaggcagtcagggtaactgacagtagagtttgaaaaatcagagggta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24417986 |
caaaggatgccgttgcaagagcacacgcgataaggcccactttttccaattttgaggcagtcagggtaactgacagtagaggttgaaaaatcagagggta |
24418085 |
T |
|
| Q |
115 |
ttagggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaattt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24418086 |
ttagggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagcgaaggtgcttgtttgcgaattt |
24418185 |
T |
|
| Q |
215 |
gggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaag |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24418186 |
gggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaag |
24418285 |
T |
|
| Q |
315 |
ggaagagttggtgatggcgatattagggtttcctccatgcctggcgccattagcaacggtattgatatgacaacagg |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24418286 |
ggaagagttggtgatggcgatattagggtttcctccatgcctggcgccattagcaacggtattgatatgacaacagg |
24418362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 19118370 - 19118265
Alignment:
| Q |
193 |
gaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacag |
292 |
Q |
| |
|
||||||| || ||||||||||||||||| || |||| | ||||| |||||| | |||| |||||||| | ||| | ||||||||||||||| ||||| |
|
|
| T |
19118370 |
gaaggtgtttctttgcgaatttgggatcggaaattagggtattgagggacttactttgacatcgaagttgtatgaggagcttcacgggaagcctgcacag |
19118271 |
T |
|
| Q |
293 |
aatctc |
298 |
Q |
| |
|
|||||| |
|
|
| T |
19118270 |
aatctc |
19118265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 320
Target Start/End: Complemental strand, 4100 - 3869
Alignment:
| Q |
89 |
agtagagtttgaaaaatcagagggtattagggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgac |
188 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||| |||||||| ||| | ||||||| |||||||| ||| || |||| | |||||| | |||||| |
|
|
| T |
4100 |
agtagagaatgaaaaatcagagggtattggtgaatcaaagagaagtaactcgcctaagttgttggtagtgcttaccaagaggtggtggcgctttgttgac |
4001 |
T |
|
| Q |
189 |
aagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctac |
288 |
Q |
| |
|
|| ||||||||||| || ||||||| |||| || ||||| || ||||| |||||||||| ||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
4000 |
aactgaaggtgcttcttaccgaatttatgatcagaaattaaggatttgaaagacttgcagacgcagcgaaattgaaggagtaatttcacgggaagcctac |
3901 |
T |
|
| Q |
289 |
acagaatctcagctacaagatcgaagggaaga |
320 |
Q |
| |
|
|||| || || || |||||||| || |||||| |
|
|
| T |
3900 |
acaggatttcggcaacaagatctaacggaaga |
3869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 100 - 320
Target Start/End: Complemental strand, 1594 - 1375
Alignment:
| Q |
100 |
aaaaatcagagggtattagggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagtgaaggtg |
199 |
Q |
| |
|
||||||||||||||||| | |||| |||||||| ||| | ||||||| |||||||| ||| |||||| | |||||| | |||||||| |||||||| |
|
|
| T |
1594 |
aaaaatcagagggtattggtgaatcaaagagaagtaactcgcctaagttgttggtagtgcttacgatgaggtggtggcgctttgttgacaa-tgaaggtg |
1496 |
T |
|
| Q |
200 |
cttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctca |
299 |
Q |
| |
|
||| || ||||||| |||| || ||||| || ||||| |||||||||| ||||||| |||||||||||| ||||||||||| |||||||| || || |
|
|
| T |
1495 |
cttcttaccgaatttatgatcagaaattaacgatttgaaagacttgcagacgcagcgaaattgaaggagtaatttcacgggaagtctacacaggatttcg |
1396 |
T |
|
| Q |
300 |
gctacaagatcgaagggaaga |
320 |
Q |
| |
|
|| |||||||| || |||||| |
|
|
| T |
1395 |
gcaacaagatctaacggaaga |
1375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 26)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 322
Target Start/End: Original strand, 772153 - 772348
Alignment:
| Q |
127 |
agagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagat |
226 |
Q |
| |
|
|||||| ||| | |||||||| ||||||||| ||||||| ||||| | || ||||||||| ||||||||||| || || ||||||||||| || || |
|
|
| T |
772153 |
agagaaataacttacctaagttgttggtagatcttaacattaggcggttacgtttggttgacatttgaaggtgctttttagcaaatttgggatcagatat |
772252 |
T |
|
| Q |
227 |
taatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaagggaagagt |
322 |
Q |
| |
|
|| | ||| |||||||||||||| |||||||| || | ||||||||| || ||||||| ||||||||||| || ||||||||||| |||||||| |
|
|
| T |
772253 |
tagagtattaaaggacttgcagaggcagcgaagctgcacgagtaactttacaggaagccggcacagaatctccgccacaagatcgaatggaagagt |
772348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 7334936 - 7335072
Alignment:
| Q |
164 |
catgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttga |
263 |
Q |
| |
|
||||||| | |||||| | |||||||| ||||||||||| ||||||||||| ||||| ||||| | ||||| ||| |||| |||||||| ||||| || |
|
|
| T |
7334936 |
catgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaagctgt |
7335035 |
T |
|
| Q |
264 |
aggagtaacttcacgggaagcctacacagaatctcag |
300 |
Q |
| |
|
| |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
7335036 |
acgagtaatttcaccggaagcctacacagaatctcag |
7335072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 322
Target Start/End: Complemental strand, 2455257 - 2455075
Alignment:
| Q |
140 |
acctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaag |
239 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| | ||||| |||||||| ||||||||||| || || ||||||||||| || || | ||||| ||| |
|
|
| T |
2455257 |
acctaagttgttggtagatcttaacattaggtggtggcgtgcggttgacatttgaaggtgctttttagcaaatttgggatcagatataagagaattaaag |
2455158 |
T |
|
| Q |
240 |
gacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaagggaagagt |
322 |
Q |
| |
|
||||||||||| |||||||| || | |||||||||||| ||||||| |||||||| || || || |||||||| |||||||| |
|
|
| T |
2455157 |
gacttgcagaggcagcgaagctgcacgagtaacttcacaggaagccggcacagaatttccgccacgagatcgaatggaagagt |
2455075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 160 - 322
Target Start/End: Original strand, 9566483 - 9566645
Alignment:
| Q |
160 |
ttaacatgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaag |
259 |
Q |
| |
|
||||||||||| |||||||| | |||||||| ||||| || || ||||||||||| ||||| || || | |||||||||||||||||||| || ||||| |
|
|
| T |
9566483 |
ttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaag |
9566582 |
T |
|
| Q |
260 |
ttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaagggaagagt |
322 |
Q |
| |
|
|| |||||| |||| |||||||||||| |||||||||| | | ||||||||||||||| |
|
|
| T |
9566583 |
ctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagt |
9566645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 319
Target Start/End: Original strand, 7428289 - 7428427
Alignment:
| Q |
181 |
tggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacggg |
280 |
Q |
| |
|
||||||||||| |||| ||||| | ||| ||||||||||| |||||||| ||||||||| |||| ||||| |||||||| |||| ||||||||| || || |
|
|
| T |
7428289 |
tggttgacaagcgaagatgcttctctgcaaatttgggatcagagattaaagaattgaagcacttacagaggcagcgaagctgaatgagtaactttaccgg |
7428388 |
T |
|
| Q |
281 |
aagcctacacagaatctcagctacaagatcgaagggaag |
319 |
Q |
| |
|
|| ||||||| ||| || || |||||||| || ||||| |
|
|
| T |
7428389 |
aattctacacaaaatttctgcaacaagatcaaacggaag |
7428427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 319
Target Start/End: Complemental strand, 12217391 - 12217253
Alignment:
| Q |
181 |
tggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacggg |
280 |
Q |
| |
|
||||||||||| |||| || || | ||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||| ||||||||| || || |
|
|
| T |
12217391 |
tggttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccgg |
12217292 |
T |
|
| Q |
281 |
aagcctacacagaatctcagctacaagatcgaagggaag |
319 |
Q |
| |
|
|| ||||||| ||| || || |||||||| || ||||| |
|
|
| T |
12217291 |
aattctacacaaaatttctgcaacaagatcaaacggaag |
12217253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 300
Target Start/End: Complemental strand, 13497571 - 13497445
Alignment:
| Q |
174 |
tggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaact |
273 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||||||| ||||| ||||| || ||||| || |||||||||| || |||||||| | ||||||| |
|
|
| T |
13497571 |
tggcgcatggttgacaaatgaaggtgcttctttgcgaattcaggatcagagatcaaagaattaaaaaacttgcagaggcatcgaagttgtacaagtaact |
13497472 |
T |
|
| Q |
274 |
tcacgggaagcctacacagaatctcag |
300 |
Q |
| |
|
|||| ||||||||||| || ||||||| |
|
|
| T |
13497471 |
tcaccggaagcctacaaaggatctcag |
13497445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 37758435 - 37758564
Alignment:
| Q |
193 |
gaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacag |
292 |
Q |
| |
|
|||| ||||| || ||||||||||||||| ||||||| ||||| |||||||||||||| || || ||||| | ||||||||| || ||||||||||| || |
|
|
| T |
37758435 |
gaagatgcttcttagcgaatttgggatccaagattaaagaattcaaggacttgcagaggcatcggagttgtaagagtaacttgacaggaagcctacatag |
37758534 |
T |
|
| Q |
293 |
aatctcagctacaagatcgaagggaagagt |
322 |
Q |
| |
|
||| || || || | |||||| |||||||| |
|
|
| T |
37758535 |
aatttctgccaccaaatcgaaaggaagagt |
37758564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 322
Target Start/End: Original strand, 7443687 - 7443817
Alignment:
| Q |
192 |
tgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacaca |
291 |
Q |
| |
|
|||| |||||| || ||||| |||||||| || ||||| ||||||||| |||| ||||| || |||||||| | |||||| ||||| |||||||| || | |
|
|
| T |
7443687 |
tgaaagtgcttcttggcgaaattgggatcagaaattaaagaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcaga |
7443786 |
T |
|
| Q |
292 |
gaatctcagctacaagatcgaagggaagagt |
322 |
Q |
| |
|
||||||||| | ||||||||||||||||| |
|
|
| T |
7443787 |
gaatctcagggaggagatcgaagggaagagt |
7443817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 298
Target Start/End: Complemental strand, 2462634 - 2462518
Alignment:
| Q |
182 |
ggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacggga |
281 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||||| ||| ||||| | | ||||||| |||| ||||| || |||||||||||||| | | |||| || |
|
|
| T |
2462634 |
ggttgacatgtgaaggtgcttctttgtgaatttggaatcagagataagggtattgaagaacttacagaggcatcgaagttgaaggagaagcctcactggg |
2462535 |
T |
|
| Q |
282 |
agcctacacagaatctc |
298 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2462534 |
agcctacacagaatctc |
2462518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 300
Target Start/End: Complemental strand, 2491481 - 2491345
Alignment:
| Q |
164 |
catgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttga |
263 |
Q |
| |
|
||||||| | |||||| | |||||||| ||||| ||||| ||||||||||| ||||| || ||||| |||||||| |||| || || || ||||| || |
|
|
| T |
2491481 |
catgaggtggtggcgctttgttgacaattgaagatgcttttttgcgaatttaggatcagaaattaaagaattgaaaaacttacaaaggcatcgaagctgt |
2491382 |
T |
|
| Q |
264 |
aggagtaacttcacgggaagcctacacagaatctcag |
300 |
Q |
| |
|
| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
2491381 |
accagtaatttcaccggaagcctacacagaatctcag |
2491345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 325
Target Start/End: Original strand, 9562638 - 9562789
Alignment:
| Q |
174 |
tggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaact |
273 |
Q |
| |
|
|||||| | |||||||| ||||||||||| ||||| |||||||||| || ||||| ||||||||| ||| || ||||| ||||| || | ||||| | |
|
|
| T |
9562638 |
tggcgcttagttgacaattgaaggtgcttctttgcaaatttgggattggaaattaaagaattgaagaactcacacagacatcgaagctgtacaagtaatt |
9562737 |
T |
|
| Q |
274 |
tcacgggaagcctacacagaatctcagctacaagatcgaagggaagagttgg |
325 |
Q |
| |
|
|||| ||||||||||| ||||| |||| | |||||| || ||||||||||| |
|
|
| T |
9562738 |
tcaccggaagcctacagagaatttcaggcagaagatcaaaaggaagagttgg |
9562789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 322
Target Start/End: Original strand, 9585875 - 9586005
Alignment:
| Q |
192 |
tgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacaca |
291 |
Q |
| |
|
||||| ||||| |||| |||||| ||||| ||||||| || || || || |||| ||| || ||||||||||||| | |||||| ||||||||||| | |
|
|
| T |
9585875 |
tgaagatgcttctttgtgaatttaggatcggagattagagatttcaacgatttgccgaggcactgaagttgaaggaggagcttcaccggaagcctacaaa |
9585974 |
T |
|
| Q |
292 |
gaatctcagctacaagatcgaagggaagagt |
322 |
Q |
| |
|
||||||||| || ||||||||||||||||| |
|
|
| T |
9585975 |
aaatctcagcaaccagatcgaagggaagagt |
9586005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 7325058 - 7325223
Alignment:
| Q |
160 |
ttaacatgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaag |
259 |
Q |
| |
|
|||||| |||| | |||||| | ||||| || ||||| || || |||||||| ||||||| || ||||| ||||||||| |||| ||||| || ||||| |
|
|
| T |
7325058 |
ttaacacgaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaag |
7325157 |
T |
|
| Q |
260 |
ttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaagggaagagttgg |
325 |
Q |
| |
|
|| | |||||| ||||| |||||||| || |||||||||| || | |||||| ||||||||||| |
|
|
| T |
7325158 |
ctgtatgagtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttgg |
7325223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 764362 - 764432
Alignment:
| Q |
256 |
gaagttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaagggaagagttggt |
326 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||| | ||||||||| || |||||||||||||||| |||| |
|
|
| T |
764362 |
gaagttgaaggaggagcttcactggaagcctacagaaaatctcagcaaccagatcgaagggaagagctggt |
764432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 322
Target Start/End: Complemental strand, 2474535 - 2474353
Alignment:
| Q |
140 |
acctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaag |
239 |
Q |
| |
|
|||||||| |||| |||| ||| ||||||| | |||||| || |||| || |||||||| || ||||||||| |||||| || ||||| ||||| ||| |
|
|
| T |
2474535 |
acctaagtagttgctagatgttaccatgaggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattggaaattaaagaattaaag |
2474436 |
T |
|
| Q |
240 |
gacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaagggaagagt |
322 |
Q |
| |
|
|||| ||||| || ||||| || | |||| || |||||||||||||| |||||||||| | ||||| ||||||||||| |
|
|
| T |
2474435 |
aacttacagaggcaccgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagt |
2474353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 2501542 - 2501392
Alignment:
| Q |
175 |
ggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaactt |
274 |
Q |
| |
|
||||| ||||||||| |||| || || ||||||||||| ||||| || ||||| ||||||||| |||| || || || ||||| || | ||||| || |
|
|
| T |
2501542 |
ggcgcttggttgacatacgaagatgtttctttgcgaatttaggatcagaaattaaagaattgaagaacttacaaaggcatcgaagctgtactagtaattt |
2501443 |
T |
|
| Q |
275 |
cacgggaagcctacacagaatctcagctacaagatcgaagggaagagttgg |
325 |
Q |
| |
|
||| |||||||| ||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
2501442 |
caccggaagcctgcacagaatctcaggcaaaagatcgaaaagaagagttgg |
2501392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 7398858 - 7398971
Alignment:
| Q |
185 |
tgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagc |
284 |
Q |
| |
|
||||| ||||||||| || |||| ||||||| ||| ||||| | | ||||||| |||| ||||| || |||||||||||||| | |||||| || ||| |
|
|
| T |
7398858 |
tgacatgtgaaggtgtttctttgtaaatttggaatcagagataagggtattgaagaacttacagaggcatcgaagttgaaggagaagcttcactgggagc |
7398957 |
T |
|
| Q |
285 |
ctacacagaatctc |
298 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7398958 |
ctacacagaatctc |
7398971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 298
Target Start/End: Original strand, 23231708 - 23231822
Alignment:
| Q |
184 |
ttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaag |
283 |
Q |
| |
|
|||| ||| ||||||| || |||||||| |||||||| ||||||| | |||||||||||| | |||||| |||||||| ||||| | ||| || ||||| |
|
|
| T |
23231708 |
ttgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaag |
23231807 |
T |
|
| Q |
284 |
cctacacagaatctc |
298 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
23231808 |
tctgcatagaatctc |
23231822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 759390 - 759475
Alignment:
| Q |
184 |
ttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagt |
269 |
Q |
| |
|
|||||||| ||||||| || ||||| || |||||||| |||| || ||||||||||||||||| | ||| |||||| |||||||| |
|
|
| T |
759390 |
ttgacaagcgaaggtggttctttgcaaaattgggatcggagactatagaattgaaggacttgcaaacacatcgaagtagaaggagt |
759475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 325
Target Start/End: Original strand, 9595291 - 9595452
Alignment:
| Q |
164 |
catgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttga |
263 |
Q |
| |
|
||||||| | |||||| | |||||||| |||||||| || ||||| ||||| ||||| || || | |||| ||| |||| || | || ||||||||| |
|
|
| T |
9595291 |
catgaggtggtggcgctttgttgacaattgaaggtgattctttgcaaattttggatcagaaataagagaatgaaagaacttacatacgcatcgaagttga |
9595390 |
T |
|
| Q |
264 |
aggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaagggaagagttgg |
325 |
Q |
| |
|
| ||| |||||||| |||||||| || ||||| ||||| | |||||||| ||||||||||| |
|
|
| T |
9595391 |
aagagaaacttcacaggaagcctgcatagaatttcagcaattagatcgaaaggaagagttgg |
9595452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 274
Target Start/End: Original strand, 37754038 - 37754131
Alignment:
| Q |
181 |
tggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaactt |
274 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||| ||||| ||||| | || ||||||||||| ||||| || || ||||| | ||||||||| |
|
|
| T |
37754038 |
tggttgacgaatgaaggtgcttctttgcgaattttggatcggagataagagagttgaaggacttacagaggcaccggagttgtaagagtaactt |
37754131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 300
Target Start/End: Original strand, 755293 - 755433
Alignment:
| Q |
160 |
ttaacatgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaag |
259 |
Q |
| |
|
||||||||||| | |||||| | |||||||| ||||| || || ||||||||||| ||||| || || | |||||||| ||||| ||||| || || || |
|
|
| T |
755293 |
ttaacatgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgcag |
755392 |
T |
|
| Q |
260 |
ttgaaggagtaacttcacgggaagcctacacagaatctcag |
300 |
Q |
| |
|
|| |||||| || | |||||||||||| |||||||||| |
|
|
| T |
755393 |
ctgtccgagtaatttgatgggaagcctacaaagaatctcag |
755433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 988754 - 988700
Alignment:
| Q |
181 |
tggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaatt |
235 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
988754 |
tggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaatt |
988700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 2441328 - 2441211
Alignment:
| Q |
181 |
tggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacggg |
280 |
Q |
| |
|
||||||||||| |||||||| || ||||||||| |||| | |||||| ||||| | |||||||||| || || || |||||||| | |||||| || |
|
|
| T |
2441328 |
tggttgacaagctgaggtgcttcttggcgaatttgtgatcggtgattaaagaattccatgacttgcagaagcatcggagctgaaggaggagcttcacagg |
2441229 |
T |
|
| Q |
281 |
aagcctacacagaatctc |
298 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
2441228 |
tagcctacacaggatctc |
2441211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 2659807 - 2659943
Alignment:
| Q |
164 |
catgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttga |
263 |
Q |
| |
|
||||||| | |||||| ||||||||| |||| ||||| |||||||| || ||||| || || | |||||||| |||| || | || ||||| || |
|
|
| T |
2659807 |
catgaggtggtggcgcttggttgacatacgaagatgcttctttgcgaaattaggatcagaaataagagaattgaaaaacttacaaacgcatcgaagctgt |
2659906 |
T |
|
| Q |
264 |
aggagtaacttcacgggaagcctacacagaatctcag |
300 |
Q |
| |
|
| |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
2659907 |
acgagtaatttcaccggaagcctacacagaatctcag |
2659943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 27755006 - 27754889
Alignment:
| Q |
181 |
tggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacggg |
280 |
Q |
| |
|
||||||||||| ||||||| || || || ||||| ||||| |||||||| ||||| |||||||| ||||| || | ||||||||| |||||||||||||| |
|
|
| T |
27755006 |
tggttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacagaggcatcaaagttgaagtagtaacttcacggg |
27754907 |
T |
|
| Q |
281 |
aagcctacacagaatctc |
298 |
Q |
| |
|
|||| | ||||||||||| |
|
|
| T |
27754906 |
aagcatgcacagaatctc |
27754889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 3926386 - 3926326
Alignment:
| Q |
185 |
tgacaagtgaaggtgcttgtttg-cgaatttgggatccgagattaatgaattgaaggacttg |
245 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
3926386 |
tgacaagtgaaggtgat-gtttgacgaatttgggatcagaaattaatgaattcaaggacttg |
3926326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 321
Target Start/End: Complemental strand, 39298507 - 39298378
Alignment:
| Q |
192 |
tgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacaca |
291 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||| || || || |||| | |||||| ||||||||||||| | |||||| || | |||| | | |
|
|
| T |
39298507 |
tgaaggtgcttcttcgcgaatttgggatctgagattagagatttccagaactttccgagacattgaagttgaaggaggagcttcactggtaacctagata |
39298408 |
T |
|
| Q |
292 |
gaatctcagctacaagatcgaagggaagag |
321 |
Q |
| |
|
|||| ||||| | |||||||||| ||||| |
|
|
| T |
39298407 |
gaatttcagcgatgagatcgaaggtaagag |
39298378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 160 - 325
Target Start/End: Complemental strand, 34059 - 33894
Alignment:
| Q |
160 |
ttaacatgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaag |
259 |
Q |
| |
|
||||||||||| | ||| || ||||||||| |||||||| || |||||||| |||||||| ||||| || |||| ||| |||| ||||| || || || |
|
|
| T |
34059 |
ttaacatgaggtggtggtgcttggttgacatatgaaggtgtttctttgcgaaattgggatctgagatcaaagaatcaaagaacttacagaggcatcggag |
33960 |
T |
|
| Q |
260 |
ttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaagggaagagttgg |
325 |
Q |
| |
|
||| | |||||| || || ||||||||||| |||||||||| || ||||| || ||||||||||| |
|
|
| T |
33959 |
ttgtatgagtaatttgaccggaagcctacatagaatctcaggtatgagatcaaaaggaagagttgg |
33894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 20305212 - 20305083
Alignment:
| Q |
183 |
gttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaa |
282 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||| | ||||| ||||||||||||||| | ||||| |||||||| | ||||||||| | ||||| |
|
|
| T |
20305212 |
gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaa |
20305113 |
T |
|
| Q |
283 |
gcctacacagaatctcagctacaagatcga |
312 |
Q |
| |
|
| || || ||||| || || || ||||||| |
|
|
| T |
20305112 |
gtctgcatagaatttctgcaaccagatcga |
20305083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 20309616 - 20309487
Alignment:
| Q |
183 |
gttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaa |
282 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||| | ||||| ||||||||||||||| | ||||| |||||||| | ||||||||| | ||||| |
|
|
| T |
20309616 |
gttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaa |
20309517 |
T |
|
| Q |
283 |
gcctacacagaatctcagctacaagatcga |
312 |
Q |
| |
|
| || || ||||| || || || ||||||| |
|
|
| T |
20309516 |
gtctgcatagaatttctgcaaccagatcga |
20309487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 283
Target Start/End: Complemental strand, 20292361 - 20292252
Alignment:
| Q |
174 |
tggcgcctggttgacaagtgaaggtgcttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaact |
273 |
Q |
| |
|
|||||| | ||||||||| |||||||||| || ||||||||||||| | ||||| ||||||||||||||| | ||||| |||||||| | |||||||| |
|
|
| T |
20292361 |
tggcgcgttgttgacaagcgaaggtgcttcttggcgaatttgggattggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaact |
20292262 |
T |
|
| Q |
274 |
tcacgggaag |
283 |
Q |
| |
|
| | |||||| |
|
|
| T |
20292261 |
taatgggaag |
20292252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 322
Target Start/End: Complemental strand, 33037595 - 33037374
Alignment:
| Q |
101 |
aaaatcagagggtattagggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagtgaaggtgc |
200 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||| | |||||||||| |||| |||||||||| | |||||| || |||||| | |||| || |
|
|
| T |
33037595 |
aaaatcagagggcattggggaatcaaagagaactaactcgtctaagtcgttattagagcttaacatgagatggtggcgcgtgtttgacatgcgaagatgt |
33037496 |
T |
|
| Q |
201 |
ttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcag |
300 |
Q |
| |
|
|| || |||||||| ||||| || ||||| ||||||| ||||| |||||||| |||||||||| ||| | || || ||||| || || ||||| |||| |
|
|
| T |
33037495 |
ttcttagcgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttcag |
33037396 |
T |
|
| Q |
301 |
ctacaagatcgaagggaagagt |
322 |
Q |
| |
|
| || ||||| || |||||||| |
|
|
| T |
33037395 |
cgacgagatcaaacggaagagt |
33037374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 264
Target Start/End: Complemental strand, 33019701 - 33019538
Alignment:
| Q |
101 |
aaaatcagagggtattagggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagtgaaggtgc |
200 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||| | ||||||||||| ||| ||| |||||| |||||||| || |||||| | ||| || |
|
|
| T |
33019701 |
aaaatcagagggcattggggaatcaaagagaactaactcgtctaagtcgttgcgagagcttagcatgagacgatggcgagtgtttgacatgcaaagatgt |
33019602 |
T |
|
| Q |
201 |
ttgtttgcgaatttgggatccgagattaatgaattgaaggacttgcagagacagcgaagttgaa |
264 |
Q |
| |
|
|| || || ||||| ||||| || | ||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
33019601 |
tttttagcaaattttggatcagaaactaatgaattgactgacttgcagaggcatcgaagttgaa |
33019538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 268
Target Start/End: Complemental strand, 33023665 - 33023515
Alignment:
| Q |
118 |
gggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggttgacaagtgaaggtgcttgtttgcgaatttggg |
217 |
Q |
| |
|
|||||| | |||||||||| | ||||||||||||||||| ||| ||| || | |||| | | ||||||| | ||| ||| || ||||||||| ||| |
|
|
| T |
33023665 |
gggaatcatagagaactaactcccctaagtcgttggtagagcttaccataagatggtggctcatagttgacatgcgaaagtgtttctttgcgaatacggg |
33023566 |
T |
|
| Q |
218 |
atccgagattaatgaattgaaggacttgcagagacagcgaagttgaaggag |
268 |
Q |
| |
|
||| | ||||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
33023565 |
atcacacattaacgaattgaaggacttgcaaagacattgaagttgaaggag |
33023515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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