View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_low_1 (Length: 915)

Name: NF3913_low_1
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_low_1
NF3913_low_1
[»] chr1 (42 HSPs)
chr1 (81-235)||(37720270-37720423)
chr1 (796-903)||(37719483-37719593)
chr1 (467-605)||(37719784-37719919)
chr1 (86-235)||(16161625-16161774)
chr1 (468-527)||(12268975-12269034)
chr1 (470-528)||(17139510-17139568)
chr1 (101-235)||(48749998-48750131)
chr1 (81-229)||(34413246-34413395)
chr1 (477-528)||(32497481-32497532)
chr1 (470-528)||(12212305-12212363)
chr1 (382-424)||(13144674-13144716)
chr1 (470-528)||(32962573-32962631)
chr1 (381-418)||(7997985-7998022)
chr1 (467-528)||(18166612-18166673)
chr1 (382-419)||(36775577-36775614)
chr1 (194-235)||(36775866-36775907)
chr1 (382-418)||(5701456-5701492)
chr1 (382-418)||(11454134-11454170)
chr1 (168-228)||(23291799-23291859)
chr1 (476-528)||(37045145-37045197)
chr1 (470-528)||(3431340-3431398)
chr1 (383-418)||(32679009-32679044)
chr1 (382-424)||(7337525-7337567)
chr1 (382-424)||(27579990-27580032)
chr1 (381-419)||(34412959-34412997)
chr1 (382-424)||(39888370-39888412)
chr1 (470-528)||(41763148-41763206)
chr1 (470-528)||(44243883-44243941)
chr1 (382-416)||(47133091-47133125)
chr1 (470-524)||(49431986-49432040)
chr1 (382-424)||(51373720-51373762)
chr1 (381-418)||(13969384-13969421)
chr1 (381-418)||(15312363-15312400)
chr1 (475-524)||(16533031-16533080)
chr1 (467-528)||(23203332-23203393)
chr1 (470-527)||(27533254-27533311)
chr1 (381-418)||(27872933-27872970)
chr1 (471-528)||(29800543-29800600)
chr1 (422-455)||(37719957-37719990)
chr1 (382-419)||(37720016-37720053)
chr1 (382-415)||(40880864-40880897)
chr1 (467-528)||(41769805-41769866)
[»] chr7 (30 HSPs)
chr7 (81-235)||(22742725-22742879)
chr7 (81-235)||(28476010-28476162)
chr7 (90-235)||(35132747-35132892)
chr7 (81-235)||(24350993-24351147)
chr7 (101-235)||(1749293-1749425)
chr7 (382-424)||(34899469-34899511)
chr7 (471-528)||(23198743-23198800)
chr7 (382-419)||(38798968-38799005)
chr7 (382-418)||(433539-433575)
chr7 (382-418)||(7640623-7640659)
chr7 (382-418)||(17611584-17611620)
chr7 (187-235)||(48930673-48930721)
chr7 (470-525)||(21554927-21554982)
chr7 (381-424)||(40993343-40993386)
chr7 (470-528)||(5579703-5579761)
chr7 (478-528)||(16537537-16537587)
chr7 (478-528)||(16628075-16628125)
chr7 (470-528)||(19599155-19599213)
chr7 (470-528)||(21322185-21322243)
chr7 (382-416)||(34773904-34773938)
chr7 (380-418)||(35141407-35141445)
chr7 (382-416)||(37849032-37849066)
chr7 (470-528)||(45088886-45088943)
chr7 (382-420)||(46822609-46822647)
chr7 (382-416)||(47590498-47590532)
chr7 (467-528)||(7670444-7670505)
chr7 (385-418)||(17222848-17222881)
chr7 (467-528)||(24559466-24559527)
chr7 (382-419)||(29617567-29617603)
chr7 (131-228)||(37837615-37837712)
[»] chr6 (21 HSPs)
chr6 (89-235)||(14801001-14801147)
chr6 (141-235)||(30776512-30776606)
chr6 (86-235)||(1523199-1523346)
chr6 (81-235)||(8102503-8102660)
chr6 (470-528)||(14918293-14918351)
chr6 (470-528)||(32524413-32524471)
chr6 (382-418)||(12059621-12059657)
chr6 (382-418)||(12653137-12653173)
chr6 (382-422)||(14802013-14802053)
chr6 (382-418)||(17334946-17334982)
chr6 (382-418)||(25064429-25064465)
chr6 (381-419)||(8102911-8102949)
chr6 (382-424)||(9341513-9341555)
chr6 (474-528)||(14772979-14773033)
chr6 (470-528)||(20013138-20013196)
chr6 (470-528)||(20744148-20744206)
chr6 (194-228)||(28981076-28981110)
chr6 (382-424)||(30776849-30776891)
chr6 (382-416)||(35001783-35001817)
chr6 (385-418)||(21942177-21942210)
chr6 (499-528)||(30639448-30639477)
[»] chr2 (39 HSPs)
chr2 (108-235)||(10237363-10237490)
chr2 (132-228)||(12648081-12648177)
chr2 (91-235)||(14955328-14955472)
chr2 (470-528)||(23250313-23250371)
chr2 (467-528)||(346114-346175)
chr2 (382-424)||(27097270-27097312)
chr2 (470-528)||(31815880-31815938)
chr2 (382-419)||(1421871-1421908)
chr2 (381-418)||(6174012-6174049)
chr2 (382-418)||(4228320-4228356)
chr2 (382-418)||(9986190-9986226)
chr2 (380-416)||(19595771-19595807)
chr2 (382-418)||(27248999-27249035)
chr2 (382-418)||(30420866-30420902)
chr2 (382-418)||(40659780-40659816)
chr2 (470-525)||(660815-660870)
chr2 (382-417)||(3268684-3268719)
chr2 (381-424)||(34128547-34128590)
chr2 (148-226)||(1415427-1415505)
chr2 (470-528)||(7350556-7350614)
chr2 (382-424)||(10929860-10929902)
chr2 (382-424)||(11931206-11931248)
chr2 (382-424)||(12554044-12554086)
chr2 (382-424)||(18763663-18763705)
chr2 (470-528)||(20565068-20565126)
chr2 (470-528)||(24592839-24592897)
chr2 (470-528)||(25395435-25395493)
chr2 (382-416)||(31128656-31128690)
chr2 (382-424)||(31788651-31788693)
chr2 (470-528)||(44110960-44111018)
chr2 (382-419)||(1415752-1415789)
chr2 (382-419)||(7646673-7646710)
chr2 (382-415)||(8809474-8809507)
chr2 (382-419)||(10237084-10237121)
chr2 (475-528)||(14463744-14463796)
chr2 (381-418)||(17319516-17319553)
chr2 (471-528)||(27244667-27244724)
chr2 (467-528)||(29599949-29600010)
chr2 (470-523)||(36264472-36264525)
[»] scaffold0888 (1 HSPs)
scaffold0888 (81-235)||(1824-1978)
[»] chr5 (34 HSPs)
chr5 (81-235)||(14211018-14211169)
chr5 (106-235)||(2979462-2979591)
chr5 (108-235)||(39567107-39567234)
chr5 (470-528)||(15889421-15889479)
chr5 (382-418)||(34881912-34881948)
chr5 (382-424)||(16981487-16981529)
chr5 (475-528)||(1669578-1669631)
chr5 (382-419)||(2979173-2979210)
chr5 (381-418)||(11976803-11976840)
chr5 (382-418)||(15571102-15571138)
chr5 (382-418)||(26877977-26878013)
chr5 (382-418)||(28235782-28235818)
chr5 (187-235)||(28541062-28541110)
chr5 (382-418)||(43148922-43148958)
chr5 (481-528)||(27721679-27721726)
chr5 (470-528)||(5107238-5107296)
chr5 (470-528)||(6489017-6489075)
chr5 (382-416)||(8984855-8984889)
chr5 (470-528)||(11720904-11720961)
chr5 (382-424)||(13007413-13007455)
chr5 (470-528)||(13864354-13864412)
chr5 (382-416)||(19280796-19280830)
chr5 (382-424)||(24229646-24229688)
chr5 (382-424)||(25980341-25980383)
chr5 (382-424)||(30298404-30298446)
chr5 (382-424)||(31391615-31391657)
chr5 (382-424)||(34945577-34945619)
chr5 (187-229)||(41214775-41214817)
chr5 (475-528)||(5846039-5846092)
chr5 (499-528)||(13044449-13044478)
chr5 (499-528)||(13114447-13114476)
chr5 (382-419)||(14211411-14211448)
chr5 (476-525)||(22393882-22393930)
chr5 (470-527)||(33412102-33412159)
[»] chr3 (30 HSPs)
chr3 (81-235)||(21289970-21290123)
chr3 (472-528)||(552184-552240)
chr3 (86-234)||(7546400-7546550)
chr3 (467-528)||(4332657-4332718)
chr3 (470-523)||(29164746-29164799)
chr3 (187-228)||(29921944-29921985)
chr3 (187-228)||(29971097-29971138)
chr3 (382-418)||(4019932-4019968)
chr3 (382-418)||(4711666-4711702)
chr3 (382-418)||(30648567-30648603)
chr3 (382-418)||(50194203-50194239)
chr3 (473-528)||(19139427-19139482)
chr3 (381-424)||(40487508-40487551)
chr3 (196-235)||(42460647-42460686)
chr3 (380-418)||(2342636-2342674)
chr3 (382-424)||(6954558-6954600)
chr3 (470-528)||(7464484-7464542)
chr3 (470-528)||(34899107-34899165)
chr3 (382-424)||(44959835-44959877)
chr3 (382-416)||(46979850-46979884)
chr3 (470-528)||(48315017-48315075)
chr3 (382-424)||(48650596-48650638)
chr3 (382-424)||(53508406-53508448)
chr3 (478-527)||(759595-759644)
chr3 (382-419)||(7546799-7546836)
chr3 (467-528)||(21628878-21628939)
chr3 (381-418)||(25631374-25631411)
chr3 (187-228)||(35175290-35175331)
chr3 (382-419)||(51303510-51303547)
chr3 (475-528)||(52904141-52904194)
[»] scaffold0007 (1 HSPs)
scaffold0007 (470-528)||(221006-221064)
[»] chr4 (35 HSPs)
chr4 (81-235)||(18935592-18935745)
chr4 (470-528)||(21318246-21318304)
chr4 (81-235)||(27651753-27651907)
chr4 (382-418)||(35261397-35261433)
chr4 (470-528)||(8027390-8027448)
chr4 (381-419)||(18935986-18936024)
chr4 (382-424)||(35348512-35348554)
chr4 (187-228)||(9713819-9713860)
chr4 (168-225)||(22063940-22063997)
chr4 (382-419)||(36194913-36194950)
chr4 (381-418)||(44947616-44947653)
chr4 (383-419)||(1621378-1621414)
chr4 (186-226)||(2069737-2069777)
chr4 (382-418)||(22301055-22301091)
chr4 (382-418)||(29966531-29966567)
chr4 (382-418)||(34024286-34024322)
chr4 (187-235)||(36194624-36194672)
chr4 (381-424)||(17949186-17949229)
chr4 (381-424)||(17953038-17953081)
chr4 (470-525)||(22164262-22164317)
chr4 (381-424)||(36161915-36161958)
chr4 (381-416)||(43853647-43853682)
chr4 (381-424)||(46829740-46829783)
chr4 (382-424)||(2520984-2521026)
chr4 (382-424)||(9643581-9643623)
chr4 (470-528)||(11949756-11949814)
chr4 (382-424)||(19853374-19853416)
chr4 (81-227)||(26633828-26633974)
chr4 (382-424)||(48257494-48257536)
chr4 (478-528)||(50362140-50362190)
chr4 (381-418)||(11299878-11299915)
chr4 (381-418)||(21090346-21090383)
chr4 (381-418)||(45227889-45227926)
chr4 (499-528)||(55430606-55430635)
chr4 (381-418)||(56172161-56172198)
[»] scaffold0445 (1 HSPs)
scaffold0445 (382-424)||(1529-1571)
[»] chr8 (29 HSPs)
chr8 (473-527)||(31336803-31336857)
chr8 (470-528)||(8999884-8999943)
chr8 (382-424)||(8412382-8412424)
chr8 (382-424)||(24099116-24099158)
chr8 (382-424)||(34612004-34612046)
chr8 (382-418)||(14544761-14544797)
chr8 (187-235)||(14585593-14585641)
chr8 (382-418)||(16794491-16794527)
chr8 (382-418)||(44099784-44099820)
chr8 (382-417)||(15665875-15665910)
chr8 (381-424)||(17693473-17693516)
chr8 (382-424)||(3673628-3673670)
chr8 (382-424)||(16928617-16928659)
chr8 (470-528)||(18638110-18638168)
chr8 (382-424)||(30568181-30568223)
chr8 (382-424)||(31013468-31013510)
chr8 (382-424)||(37971470-37971512)
chr8 (86-160)||(39655303-39655377)
chr8 (470-528)||(41625204-41625262)
chr8 (470-523)||(8881290-8881343)
chr8 (381-418)||(9501917-9501954)
chr8 (381-418)||(12243960-12243997)
chr8 (382-419)||(23230830-23230867)
chr8 (467-528)||(24023405-24023466)
chr8 (471-528)||(37938505-37938562)
chr8 (382-419)||(41896704-41896741)
chr8 (382-419)||(42046408-42046445)
chr8 (382-419)||(43833861-43833898)
chr8 (382-419)||(45445676-45445713)
[»] scaffold0347 (2 HSPs)
scaffold0347 (382-419)||(6215-6252)
scaffold0347 (187-226)||(5904-5943)
[»] scaffold0443 (1 HSPs)
scaffold0443 (386-418)||(4402-4434)
[»] scaffold0022 (1 HSPs)
scaffold0022 (382-418)||(83284-83320)
[»] scaffold0127 (1 HSPs)
scaffold0127 (382-424)||(15677-15719)
[»] scaffold0039 (1 HSPs)
scaffold0039 (187-221)||(92991-93025)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 37720423 - 37720270
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||| || || |||||||||||||||||||||||||||| | |||||||||||  |||    
T  37720423 ttagggagagaaactctctattctttctaagttttcttcctctttcacatatggaggagaggtgatcttaggttaatttttgaccttgaatcacct-tcg 37720325  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
       ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  37720324 gtataatttttctcctttctttcaatctaaataagtgatttccacatacatcaag 37720270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 796 - 903
Target Start/End: Complemental strand, 37719593 - 37719483
Alignment:
Q  796 ctcaataacgcaataagacaggatagagggacacaaaattctcatctaaatgttgg---taatgataataataaattccttcccttagaaaagaaataat 892  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||    
T  37719593 ctcattaacgcaataagacgggatagacggacacaaaattctcatctaaatgttggtaataataataataataaattccttcccttagaaaagaaataat 37719494  T
Q  893 aagcacaggtt 903  Q
    |||||||||||    
T  37719493 aagcacaggtt 37719483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 467 - 605
Target Start/End: Complemental strand, 37719919 - 37719784
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgagnnnnnnnnnnnnnnnngacaaacacctaccaactgagt 566  Q
    |||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||                 |||||||||||| |||||||||    
T  37719919 gtagtggttggagtttgaaccctcgactttgaatatattatgcattgttcctaccaactga---ttttttttttttttgacaaacacctatcaactgagt 37719823  T
Q  567 taaatactattttgttggagttatttaaaaagataaaaa 605  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  37719822 taaatactattttgttggggttatttaaaaagataaaaa 37719784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 16161625 - 16161774
Alignment:
Q  86 gagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgta 185  Q
    ||||||||||||  ||||| ||||| |||||||||| |||| || || |||||| ||| || |||||| ||||||| | || |||||||| |||  | ||    
T  16161625 gagagaaactctgcattctctctaaattttcttcctctttcacacatcgaggaggggtaattttaggtcaatttttgacctagaatcacctctcttcata 16161724  T
Q  186 atttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
     |||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  16161725 ttttttctcctttatttcaatctaaataagtgatttccacatacatcaag 16161774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 468 - 527
Target Start/End: Original strand, 12268975 - 12269034
Alignment:
Q  468 tagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactga 527  Q
    |||||||||||||||||||||  ||| ||| |||||||||||||| ||||||||||||||    
T  12268975 tagtggtcggggtttgaaccccggaccttgcatatattatgcattgttcctaccaactga 12269034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 17139510 - 17139568
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| |||||||||||||||||| | |||||||||||||    
T  17139510 gtggtcggggtttgaaccccggaccttgaatatattatgcattgtccctaccaactgag 17139568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 48749998 - 48750131
Alignment:
Q  101 ttctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatttttctcctttct 200  Q
    |||| |||||||||||||||| |||| |  || |||||| |||||| |||||| || |||| | || ||||||| ||| | | |  |||||| |||||||    
T  48749998 ttctctctaagttttcttcctctttcactcatcgaggaggggtgatattaggtcaaattttgacctagaatcactccttg-catcttttttcccctttct 48750096  T
Q  201 ttcaatctaaataaatgatttccacatacgtcaag 235  Q
    |||||||||||||| |||||| ||||||| |||||    
T  48750097 ttcaatctaaataagtgattttcacatacatcaag 48750131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 34413395 - 34413246
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| ||||||||||||   |||| |||||||||| || || |||| |  || ||| || |||||| |||||| ||||||| |||| ||||||||||||     
T  34413395 ttagtgagagaaactctgccttctctctaagttttttttctctttcacttatcgagtaggggtgattttaggtcaattttttatctagaatcacccctct 34413296  T
Q  181 acgtaattttt-ctcctttctttcaatctaaataaatgatttccacatac 229  Q
     | |  ||||| | ||||||||||||||||||||| |||||| |||||||    
T  34413295 gcatctttttttcccctttctttcaatctaaataagtgattttcacatac 34413246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 477 - 528
Target Start/End: Original strand, 32497481 - 32497532
Alignment:
Q  477 gggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||| ||| ||| |||||||||||||| |||||||||||||||    
T  32497481 gggtttgaaccctagaccttgcatatattatgcattgttcctaccaactgag 32497532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 12212363 - 12212305
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||| |||||||| ||||    
T  12212363 gtggtcggggtttgaaccccggacgttgcatatattatgcattatccctaccaaatgag 12212305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 13144716 - 13144674
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  13144716 tattaacttggatgttgtgagtttgttcgcagattcacccttt 13144674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 32962631 - 32962573
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||| ||| ||| |||| ||||||||| ||| |||||||||||    
T  32962631 gtggtcggggtttgaaccctggaccttgcatattttatgcattgttcataccaactgag 32962573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 7997985 - 7998022
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  7997985 ttattaacttggatgatgtgagtttgtttgcagattca 7998022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 528
Target Start/End: Complemental strand, 18166673 - 18166612
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||||||  ||||||| |||||||||||||| |   |||||||||||    
T  18166673 gtagtggtcggggtttgaaccccggactttgcatatattatgcattgtctataccaactgag 18166612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 36775614 - 36775577
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36775614 tattaacttggatgttgtgagtttgttcgcagattcac 36775577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 36775907 - 36775866
Alignment:
Q  194 cctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  36775907 cctttctttcaatctaaataaatgattttcacatacatcaag 36775866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 5701456 - 5701492
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  5701456 tattaacttggatgttgtgagtttgttcgcagattca 5701492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 11454134 - 11454170
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  11454134 tattaacttggatgttgtgagtttgttcgcagattca 11454170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 23291859 - 23291799
Alignment:
Q  168 gaatcacccctcgacgtaatttttctcctttctttcaatctaaataaatgatttccacata 228  Q
    ||||||||||||||| |  |||||||| ||||||||||||||||||| || ||| ||||||    
T  23291859 gaatcacccctcgacatcttttttctcttttctttcaatctaaataagtggttttcacata 23291799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 37045145 - 37045197
Alignment:
Q  476 ggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||| ||||||| ||| ||| |||||||||||||| |||||||||||||||    
T  37045145 ggggttcgaaccctggaccttgcatatattatgcattgttcctaccaactgag 37045197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 3431398 - 3431340
Alignment:
Q  470 gtggtcggggtttgaaccctcg-actttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||| ||| || ||| |||||||||||||| |||||||||||||||    
T  3431398 gtggtcggggtttgaacc-tcgtacattgcatatattatgcattcttcctaccaactgag 3431340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 32679044 - 32679009
Alignment:
Q  383 attaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||||||||||||| |||||||||    
T  32679044 attaacttggatgttgtgagtttgttcgcagattca 32679009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 7337567 - 7337525
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  7337567 tattaacttggctgttgtgagtttgttcgcagattcacccttt 7337525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 27580032 - 27579990
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  27580032 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 27579990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 419
Target Start/End: Complemental strand, 34412997 - 34412959
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  34412997 ttattaacttgggtgttgtgagtttgttcgcagattcac 34412959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 39888370 - 39888412
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||| |||||||||||||| || |||||||||||||||    
T  39888370 tattaacttagatgttgtgagtttattcgcagattcactcttt 39888412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 41763148 - 41763206
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||| ||||||||||||||  ||| ||| |||| ||||||||||| |||||||||||||    
T  41763148 gtggccggggtttgaaccccggaccttgcatattttatgcattatccctaccaactgag 41763206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 44243941 - 44243883
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||| ||||||||||| || ||| ||  |||||||||||||| |||||||||||||||    
T  44243941 gtggttggggtttgaactctggaccttacatatattatgcattgttcctaccaactgag 44243883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 47133091 - 47133125
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagatt 416  Q
    ||||||||||||||||||||||||||| |||||||    
T  47133091 tattaacttggatgttgtgagtttgttcgcagatt 47133125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 524
Target Start/End: Original strand, 49431986 - 49432040
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaac 524  Q
    |||| ||||||||||||||  ||| ||  ||||||||||||||||||||||||||    
T  49431986 gtggccggggtttgaaccccggaccttacatatattatgcattattcctaccaac 49432040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 51373762 - 51373720
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||    
T  51373762 tattaacttgggtgttgtgagtttgtttggagattcacccttt 51373720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 13969421 - 13969384
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  13969421 ttattaacatggatgttgtgagtttgttcgcagattca 13969384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 15312400 - 15312363
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  15312400 ttattaacatggatgttgtgagtttgttcgcagattca 15312363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 16533031 - 16533080
Alignment:
Q  475 cggggtttgaaccctcgactttgaatatattatgcattattcctaccaac 524  Q
    ||||||||||| ||| ||| ||| |||||||||||||| |||||||||||    
T  16533031 cggggtttgaatcctagaccttgcatatattatgcattgttcctaccaac 16533080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 528
Target Start/End: Complemental strand, 23203393 - 23203332
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||||||   || ||| |||| ||||||||| |||| ||||||||||    
T  23203393 gtagtggtcggggtttgaaccccgaaccttgcatattttatgcattgttccaaccaactgag 23203332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 27533311 - 27533254
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactga 527  Q
    |||||||||||||||||||   || ||| |||||||||||||| | ||||||||||||    
T  27533311 gtggtcggggtttgaaccccgaaccttgcatatattatgcattgtccctaccaactga 27533254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 27872933 - 27872970
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  27872933 ttattaacttgaatgttgtgagtttgttcgcagattca 27872970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 29800600 - 29800543
Alignment:
Q  471 tggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||| ||||||||||||| |||| ||| |||| ||||||||||| | |||||||||||    
T  29800600 tggttggggtttgaacccccgaccttgcatattttatgcattatccttaccaactgag 29800543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 455
Target Start/End: Complemental strand, 37719990 - 37719957
Alignment:
Q  422 tttcattctaaattatatctttaaataaagttga 455  Q
    ||||||| ||||||||||||||||||||||||||    
T  37719990 tttcattttaaattatatctttaaataaagttga 37719957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 37720053 - 37720016
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  37720053 tattaacttgggtgttgtgagtttgtttgcaaattcac 37720016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 415
Target Start/End: Complemental strand, 40880897 - 40880864
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagat 415  Q
    ||||||||||||||||||||||||||| ||||||    
T  40880897 tattaacttggatgttgtgagtttgttcgcagat 40880864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 41769805 - 41769866
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||| ||||||||||  ||| ||| |||||||||||||||| |  ||||||||||    
T  41769805 gtagtggtcggagtttgaaccccggaccttggatatattatgcattatccaaaccaactgag 41769866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 22742725 - 22742879
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| |||||||||| | |||||| |||||||||||||||| ||||    || |||||| |||||| |||||| |||||||||||| ||||||||||||     
T  22742725 ttagtgagagaaactatgtattctctctaagttttcttcctctttcattcatcgaggaggggtgattttaggtcaatttttaatctagaatcacccctct 22742824  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
     | |  |||||| ||||||||||||||||||||| |||||| ||||||| |||||    
T  22742825 gcatcttttttcccctttctttcaatctaaataagtgattttcacatacatcaag 22742879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 28476010 - 28476162
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| |||||||||||| |||||| |||||||||||||||| |||| || || |||||| |||||| |||||| ||||||| | || |||||||||| |     
T  28476010 ttagtgagagaaactctttattctctctaagttttcttcctctttcacatatcgaggaggggtgattttaggtcaatttttgacctagaatcaccccgca 28476109  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
       |  |||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  28476110 tatt--tttttctcctttctttcaatctaaataagtgattttcacatacatcaag 28476162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 35132747 - 35132892
Alignment:
Q  90 gaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaattt 189  Q
    |||||||| | |||| |||||||||||||||| |||| |  || |||||| |||||| |||||| ||||||| | || |||||||||||| || |  |||    
T  35132747 gaaactctgtcttctctctaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacccctctacatctttt 35132846  T
Q  190 ttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    ||| ||||||||| ||||||||||| |||||| ||||||| |||||    
T  35132847 ttcccctttcttttaatctaaataagtgattttcacatacatcaag 35132892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 24351147 - 24350993
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| |||||||||||| | |||| | |||||||||||||| | || |  || |||||| |||||| |||||| ||||||| | || |||||||||||      
T  24351147 ttagtgagagaaactctgtcttctctttaagttttcttcctctctcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacccctgt 24351048  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
     | |  |||||  ||||||||||||||||||||| |||||| ||||||| |||||    
T  24351047 gcatccttttttccctttctttcaatctaaataagtgattttcacatacatcaag 24350993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 1749425 - 1749293
Alignment:
Q  101 ttctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatttttctcctttct 200  Q
    |||| |||||||||||||||| |||| |  || |||||| |||||| |||||| ||||||| | || |||||||||  |  | |  |||||| |||||||    
T  1749425 ttctctctaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacccg-cttcatcttttttc-cctttct 1749328  T
Q  201 ttcaatctaaataaatgatttccacatacgtcaag 235  Q
    |||||||||||||| |||||| ||||||| |||||    
T  1749327 ttcaatctaaataagtgattttcacatacatcaag 1749293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 34899511 - 34899469
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  34899511 tattaacttggatgttgtgagtttgttcgcagattcacccttt 34899469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 23198743 - 23198800
Alignment:
Q  471 tggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||  ||||||| |||| ||||||||| ||| |||||||||||    
T  23198743 tggtcggggtttgaaccccggactttgcatattttatgcattgttcataccaactgag 23198800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 38798968 - 38799005
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  38798968 tattaacttggatgttgtgagtttgttcgcagattcac 38799005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 433575 - 433539
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  433575 tattaacttggatgttgtgagtttgttcgcagattca 433539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 7640659 - 7640623
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  7640659 tattaacttggatgttgtgagtttgttcgcagattca 7640623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 17611584 - 17611620
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17611584 tattaacttggatgttgtgagtttgttcgcagattca 17611620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 48930673 - 48930721
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    |||||| ||||||||||||||||||||| |||||| ||||||| |||||    
T  48930673 tttttcccctttctttcaatctaaataagtgattttcacatacatcaag 48930721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 21554927 - 21554982
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaact 525  Q
    |||||||||||||||| ||| ||| ||| |||||||| ||||||| ||||||||||    
T  21554927 gtggtcggggtttgaatcctggaccttgcatatattaagcattatccctaccaact 21554982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 40993343 - 40993386
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||    
T  40993343 ttattaacttgggtgttgtgagtttgttcgcagattcacccttt 40993386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 5579761 - 5579703
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||| |||||||||||| | | |||||||||||||    
T  5579761 gtggtcggggtttgaaccccagaccttgcatatattatgcactgtccctaccaactgag 5579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 478 - 528
Target Start/End: Original strand, 16537537 - 16537587
Alignment:
Q  478 ggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||  ||| ||| |||||||||||||||| |||||||||||||    
T  16537537 ggtttgaaccccagaccttgtatatattatgcattatccctaccaactgag 16537587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 16628125 - 16628075
Alignment:
Q  478 ggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||  ||| ||| |||||||||||||||| |||||||||||||    
T  16628125 ggtttgaaccccagaccttgtatatattatgcattatccctaccaactgag 16628075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 19599213 - 19599155
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||| |||||||||||||| | | |||||||||||    
T  19599213 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgag 19599155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 21322243 - 21322185
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||| ||||||||||||||| ||| ||| ||| |||||||||||| | |||||||||||    
T  21322243 gtggccggggtttgaaccctggaccttgcatacattatgcattatccttaccaactgag 21322185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 34773904 - 34773938
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagatt 416  Q
    |||||||||||||| ||||||||||||||||||||    
T  34773904 tattaacttggatgctgtgagtttgtttgcagatt 34773938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 35141445 - 35141407
Alignment:
Q  380 attattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  35141445 attattaacatggatgttgtgagtttgttcgcagattca 35141407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 37849032 - 37849066
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagatt 416  Q
    |||||||||||||| ||||||||||||||||||||    
T  37849032 tattaacttggatgctgtgagtttgtttgcagatt 37849066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 45088943 - 45088886
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||| |||| ||| |||||||||||||| ||| |||||| ||||    
T  45088943 gtggtcggggtttgaaccc-cgaccttgcatatattatgcattgttcataccaattgag 45088886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 46822647 - 46822609
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcact 420  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  46822647 tattaacttggatgttgtgagtttgttcgcatattcact 46822609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 47590498 - 47590532
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagatt 416  Q
    ||||||||||| |||||||||||||||||||||||    
T  47590498 tattaacttgggtgttgtgagtttgtttgcagatt 47590532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 528
Target Start/End: Complemental strand, 7670505 - 7670444
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||| |||||||||||  ||| ||| |||||||||||||| |||  ||||||||||    
T  7670505 gtagtggtcgaggtttgaaccccggaccttgcatatattatgcattgttcaaaccaactgag 7670444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 17222881 - 17222848
Alignment:
Q  385 taacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||||||||||| |||||||||    
T  17222881 taacttggatgttgtgagtttgttcgcagattca 17222848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 24559466 - 24559527
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||| ||| |||| | || |||| |||||||||||||| ||||||| |||||||    
T  24559466 gtagtggtcgggatttaaaccttagattttgcatatattatgcattgttcctactaactgag 24559527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 29617603 - 29617567
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  29617603 tattaacttgg-tgttgtgagtttgtttgcagattcac 29617567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 37837712 - 37837615
Alignment:
Q  131 attgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatttttctcctttctttcaatctaaataaatgatttccacata 228  Q
    ||||||||| |||| | |||||| | ||||| | || |||||||||||| || |  |||||| | ||||||||||||||||||| || ||| ||||||    
T  37837712 attgaggaggggtggttttaggtcattttttgacctagaatcacccctctacatcttttttcccttttctttcaatctaaataagtggtttacacata 37837615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 14801001 - 14801147
Alignment:
Q  89 agaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatt 188  Q
    ||||||||| | || | ||||| |||||||| | |||| |  |||||||||||||||| |||||||||||||| |||| ||||||||||||    || ||    
T  14801001 agaaactctgtcttttctctaatttttcttcatctttcactcattgaggagaggtgattttaggttaatttttgatctagaatcacccctctgtatattt 14801100  T
Q  189 tttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    |||| ||||||||||||||||||||| | |||| ||||||| |||||    
T  14801101 tttcccctttctttcaatctaaataagtaattttcacatacatcaag 14801147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 30776512 - 30776606
Alignment:
Q  141 ggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    |||||| |||||| ||||||| | || ||||||||||||  | || |||||||||||||||||||||||||||| | |||||||||||| |||||    
T  30776512 ggtgattttaggtcaatttttgacctagaatcacccctctgcatattttttctcctttctttcaatctaaataagtaatttccacatacatcaag 30776606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 1523199 - 1523346
Alignment:
Q  86 gagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgta 185  Q
    ||||||||||||| ||||| |||||||||| || || |||| || ||  ||||| |||||| |||||| ||||||| | || ||||||||| ||  | |     
T  1523199 gagagaaactctacattctctctaagttttatttctctttcacacatgaaggaggggtgattttaggtcaatttttgacctagaatcaccc-tctgcatt 1523297  T
Q  186 atttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
     |||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  1523298 -tttttctcttttctttcaatctaaataagtgatttccacatacatcaag 1523346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 8102503 - 8102660
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttagg-ttaatttttaatcttgaatcacccctc 179  Q
    |||| |||||||||| | | |||| |||||||||||||| | |||  || || |||||| |||||| ||||| ||||||||| | || ||||||||||||    
T  8102503 ttagtgagagaaactatttcttctctctaagttttcttcttctttaacatatcgaggaggggtgattttaggtttaatttttgacctagaatcacccctc 8102602  T
Q  180 gacgta--atttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
      | ||   |||||||||||||||||||||||||||| |||||| |||| || |||||    
T  8102603 tgcatattttttttctcctttctttcaatctaaataagtgattttcacaaacatcaag 8102660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 14918293 - 14918351
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||| |||||||||||||| | |||||||||||||    
T  14918293 gtggtcggggtttgaaccccagaccttgtatatattatgcattgtccctaccaactgag 14918351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 32524413 - 32524471
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||| |||||||||||||| ||||||| |||||||||||||| | |||||||| ||||    
T  32524413 gtggttggggtttgaaccctggactttgcatatattatgcattgtccctaccaattgag 32524471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 12059657 - 12059621
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12059657 tattaacttggatgttgtgagtttgttcgcagattca 12059621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 12653137 - 12653173
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12653137 tattaacttggatgttgtgagtttgttcgcagattca 12653173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 14802013 - 14802053
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactct 422  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  14802013 tattaacttggatgctgtgagtttgttcgcagattcactct 14802053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 17334946 - 17334982
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17334946 tattaacttggatgttgtgagtttgttcgcagattca 17334982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 25064429 - 25064465
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  25064429 tattaacttggatgttgtgagtttgttcgcagattca 25064465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 419
Target Start/End: Original strand, 8102911 - 8102949
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    |||||||||||| || |||||||||||||||||||||||    
T  8102911 ttattaacttgggtgctgtgagtttgtttgcagattcac 8102949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 9341555 - 9341513
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  9341555 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 9341513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 474 - 528
Target Start/End: Original strand, 14772979 - 14773033
Alignment:
Q  474 tcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||| || |||| ||| |||||||||||||| ||| |||||||||||    
T  14772979 tcggggtttgaatccccgaccttggatatattatgcattgttcataccaactgag 14773033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 20013138 - 20013196
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||| |   | |||| ||||||||||||||||||||||||| ||||    
T  20013138 gtggtcggggtttgaacacagaaatttgtatatattatgcattattcctaccaattgag 20013196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 20744206 - 20744148
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||| |||||||||||||| | | |||||||||||    
T  20744206 gtggtcggggtttgaaccccagaccttgcatatattatgcattgtccataccaactgag 20744148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 28981076 - 28981110
Alignment:
Q  194 cctttctttcaatctaaataaatgatttccacata 228  Q
    ||||||||||||||||||||| |||||||||||||    
T  28981076 cctttctttcaatctaaataagtgatttccacata 28981110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 30776849 - 30776891
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  30776849 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 30776891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 35001783 - 35001817
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagatt 416  Q
    ||||||||||||||||||||||||||| |||||||    
T  35001783 tattaacttggatgttgtgagtttgttcgcagatt 35001817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Complemental strand, 21942210 - 21942177
Alignment:
Q  385 taacttggatgttgtgagtttgtttgcagattca 418  Q
    |||| |||||||||||||||||||||||||||||    
T  21942210 taacatggatgttgtgagtttgtttgcagattca 21942177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 528
Target Start/End: Original strand, 30639448 - 30639477
Alignment:
Q  499 atatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||||||||||||||    
T  30639448 atatattatgcattattcctaccaactgag 30639477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 10237490 - 10237363
Alignment:
Q  108 taagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatttttctcctttctttcaatc 207  Q
    |||||||||||||| |||| |  || ||| ||||||||| |||||| ||||||| | || |||||||||||| || |  |||||| ||||||||||||||    
T  10237490 taagttttcttcctctttcactcatcgagtagaggtgattttaggtcaatttttgacctagaatcacccctctacatcttttttcccctttctttcaatc 10237391  T
Q  208 taaataaatgatttccacatacgtcaag 235  Q
    ||||||| |||||| ||||||| |||||    
T  10237390 taaataagtgattttcacatacatcaag 10237363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 12648177 - 12648081
Alignment:
Q  132 ttgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatttttctcctttctttcaatctaaataaatgatttccacata 228  Q
    |||||||| |||| | |||||| | ||||| | || |||||||||||| || |  |||||||| ||||||||||||||||||| |||||||||||||    
T  12648177 ttgaggaggggtggttttaggtcattttttgacctagaatcacccctccacatcttttttctcttttctttcaatctaaataagtgatttccacata 12648081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 14955328 - 14955472
Alignment:
Q  91 aaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatttt 190  Q
    ||||||||| |||| |  ||||||||||||| |||| |  || |||||| |||||| ||| || ||||||| | || |||||| |||||  | |  ||||    
T  14955328 aaactctatcttctcttaaagttttcttcctctttcactcatcgaggaggggtgattttaagtcaatttttgacctagaatcatccctctgcatcttttt 14955427  T
Q  191 tctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    ||  |||||||||||||||||||| |||||||||||||| |||||    
T  14955428 tcctctttctttcaatctaaataagtgatttccacatacatcaag 14955472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 23250313 - 23250371
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||| ||| ||| |||||||||||||| ||| |||||||||||    
T  23250313 gtggtcggggtttgaaccctggaccttgcatatattatgcattgttcttaccaactgag 23250371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 346114 - 346175
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||||||| ||| ||  ||||||||||||||||||  ||||||||||    
T  346114 gtagtggtcggggtttgaaccctggaccttacatatattatgcattattcaaaccaactgag 346175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 27097312 - 27097270
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
T  27097312 tattaacttgggtgttgtgagtttgtttgcagattcacccttt 27097270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 31815880 - 31815938
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||| |||||||||||||| | |||||||||||||    
T  31815880 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgag 31815938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 1421871 - 1421908
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  1421871 tattaacttgggtgttgtgagtttgtttgcagattcac 1421908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 6174012 - 6174049
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||||||||||||||| |||||||||    
T  6174012 ttattaacttggatgttgtgagtttgttcgcagattca 6174049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 4228320 - 4228356
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4228320 tattaacttggatgttgtgagtttgttcgcagattca 4228356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 9986226 - 9986190
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  9986226 tattaacttggatgttgtgagtttgttcgcagattca 9986190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 19595807 - 19595771
Alignment:
Q  380 attattaacttggatgttgtgagtttgtttgcagatt 416  Q
    |||||||||||||||| ||||||||||||||||||||    
T  19595807 attattaacttggatgctgtgagtttgtttgcagatt 19595771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 27249035 - 27248999
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  27249035 tattaacttggatgttgtgagtttgttcgcagattca 27248999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 30420866 - 30420902
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  30420866 tattaacttggatgttgtgagtttgttcgcagattca 30420902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 40659816 - 40659780
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  40659816 tattaacttggatgttgtgagtttgttcgcagattca 40659780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 660815 - 660870
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaact 525  Q
    |||||||||||||||||||| ||| ||| |||||||||||||| | | ||||||||    
T  660815 gtggtcggggtttgaaccctggaccttgcatatattatgcattgtccataccaact 660870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 3268719 - 3268684
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattc 417  Q
    |||||||||||||| |||||||||||||||||||||    
T  3268719 tattaacttggatgctgtgagtttgtttgcagattc 3268684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 34128590 - 34128547
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||    
T  34128590 ttattaacttggatattgtgaggttgtttgcagattcacccttt 34128547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 1415427 - 1415505
Alignment:
Q  148 ttaggttaatttttaatcttgaatcacccctcgacgtaatttttctcctttctttcaatctaaataaatgatttccaca 226  Q
    |||||||| ||||| |||| |||||||||||| || |  |||||| | ||||||||||| ||||||| |||||| ||||    
T  1415427 ttaggttattttttgatctagaatcacccctctacatcttttttcccttttctttcaatttaaataagtgattttcaca 1415505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 7350614 - 7350556
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||| || |||||||||| ||||||| |||||||||||||| | | |||||||||||    
T  7350614 gtggtcaggatttgaaccctagactttgcatatattatgcattgtccataccaactgag 7350556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 10929860 - 10929902
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||||| |||||||||||||||| |||||| ||||    
T  10929860 tattaacttggatgctgtgagtttgtttgcatattcacccttt 10929902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 11931206 - 11931248
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  11931206 tattaacatggatgttgtgagtttgttcgcagattcattcttt 11931248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 12554086 - 12554044
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  12554086 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 12554044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 18763663 - 18763705
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  18763663 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 18763705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 20565068 - 20565126
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||| |||||||||||||  ||| ||| |||||||||||||| | |||||||||||||    
T  20565068 gtggttggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgag 20565126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 24592839 - 24592897
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||| ||||||||||||||  ||| ||| |||||||||||||| | |||||||||||||    
T  24592839 gtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgag 24592897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 25395435 - 25395493
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||| |||||||| |  || ||| |||||||||||||| |||||||||||||||    
T  25395435 gtggtcgggatttgaaccttgaaccttgcatatattatgcattgttcctaccaactgag 25395493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 416
Target Start/End: Complemental strand, 31128690 - 31128656
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagatt 416  Q
    ||||||||||||||||||||||||||| |||||||    
T  31128690 tattaacttggatgttgtgagtttgttcgcagatt 31128656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 31788651 - 31788693
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||||| |||||||||||| |||||||||| ||||    
T  31788651 tattaacttggatgctgtgagtttgttcgcagattcacccttt 31788693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 44111018 - 44110960
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||| |||||||||||||| ||||||  ||||| |||||| | |||||||||||||||    
T  44111018 gtggttggggtttgaaccctagactttacatatactatgcactgttcctaccaactgag 44110960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 1415752 - 1415789
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  1415752 tattaacttgggtgttgtgagtttgttcgcagattcac 1415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 7646673 - 7646710
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  7646673 tattaacttgggtgttgtgagtttgttcgcagattcac 7646710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 415
Target Start/End: Original strand, 8809474 - 8809507
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagat 415  Q
    ||||||||||||||||||||||||||| ||||||    
T  8809474 tattaacttggatgttgtgagtttgttcgcagat 8809507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 10237121 - 10237084
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  10237121 tattaacttgggtgttgtgagtttgttcgcagattcac 10237084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 14463744 - 14463796
Alignment:
Q  475 cggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||| | ||||||| |||||||||||||| | |||||||||||||    
T  14463744 cggggtttgaacc-tggactttggatatattatgcattttccctaccaactgag 14463796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 17319516 - 17319553
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  17319516 ttattaacttggatgtcgtgagtttgttcgcagattca 17319553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 27244724 - 27244667
Alignment:
Q  471 tggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||| |||||||||| ||| ||| |||||||||||||| | |||| ||||||||    
T  27244724 tggtcgggctttgaaccctagaccttgcatatattatgcattgtccctatcaactgag 27244667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 528
Target Start/End: Complemental strand, 29600010 - 29599949
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||| ||||||||||  ||| ||| |||||||||||||||| |  ||||||||||    
T  29600010 gtagtggtcggagtttgaaccccggaccttggatatattatgcattatccaaaccaactgag 29599949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 523
Target Start/End: Original strand, 36264472 - 36264525
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaa 523  Q
    |||||||||||||||||||   |||||| |||||||||||||||| | ||||||    
T  36264472 gtggtcggggtttgaaccccgaactttgcatatattatgcattatccataccaa 36264525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 1978 - 1824
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| |||||||||||| | |||| |||| ||||||||||| |||| |  || |||||| |||||| |||||| ||||||| | || |||||||| |||     
T  1978 ttagtgagagaaactctgtcttctctctacgttttcttcctctttcacttatcgaggaggggtgatattaggtcaatttttgacctagaatcacctctct 1879  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
     | |  |||||| ||||||||||||||||||||| |||||| ||||||| |||||    
T  1878 gcatcttttttcccctttctttcaatctaaataagtgattttcacatacatcaag 1824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 14211018 - 14211169
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| |||||||||||| | |||| |||||||||||||||| |||| |  || |||||| |||||| |||||| ||||||| | || ||||||||||||     
T  14211018 ttagtgagagaaactctgtcttctctctaagttttcttcctctttcactcatcgaggag-ggtgattttaggtcaatttttgacctagaatcacccctct 14211116  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
     | |  |||||| ||||||||||||||||||||| |||||| ||||||| |||||    
T  14211117 gcat-ctttttc-cctttctttcaatctaaataagtgattttcacatacatcaag 14211169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 235
Target Start/End: Complemental strand, 2979591 - 2979462
Alignment:
Q  106 tctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatttttctcctttctttcaa 205  Q
    |||||||||||||||| |||| |  || |||||| |||||| |||||| ||||||| | ||  |||||||||||  | |  ||||||  |||||||||||    
T  2979591 tctaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctataatcacccctctgcatcttttttcctctttctttcaa 2979492  T
Q  206 tctaaataaatgatttccacatacgtcaag 235  Q
    ||||||||| |||||| ||||||| |||||    
T  2979491 tctaaataagtgattttcacatacatcaag 2979462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 235
Target Start/End: Original strand, 39567107 - 39567234
Alignment:
Q  108 taagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcgacgtaatttttctcctttctttcaatc 207  Q
    |||||||||||||| |||| |  || |||||| |||||| |||||| ||||||| | || ||||||| ||||  | |  |||| | ||||||||||||||    
T  39567107 taagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacgcctctgcatctttttccccctttctttcaatc 39567206  T
Q  208 taaataaatgatttccacatacgtcaag 235  Q
    ||||||| |||||| ||||||| |||||    
T  39567207 taaataagtgattttcacatacatcaag 39567234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 15889479 - 15889421
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||| ||| ||| |||||||||||||| | |||||||||||||    
T  15889479 gtggtcggggtttgaaccctagaccttgcatatattatgcattgtccctaccaactgag 15889421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 34881912 - 34881948
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||||||||||||||||||||||||    
T  34881912 tattaacttggatgttgtgagtttgtttgcagattca 34881948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 16981487 - 16981529
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  16981487 tattaacttggatgttgtgagtttgttcgcagattcattcttt 16981529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 1669578 - 1669631
Alignment:
Q  475 cggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||| ||||||||| ||||||| |||||||||||||| ||| |||||||||||    
T  1669578 cggggattgaaccctagactttgcatatattatgcattgttcttaccaactgag 1669631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 2979210 - 2979173
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  2979210 tattaacttggatgttgtgagtttgttcgcagattcac 2979173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 11976840 - 11976803
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||||||||||||||| |||||||||    
T  11976840 ttattaacttggatgttgtgagtttgttcgcagattca 11976803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 15571102 - 15571138
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  15571102 tattaacttggatgttgtgagtttgttcgcagattca 15571138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 26878013 - 26877977
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26878013 tattaacttggatgttgtgagtttgttcgcagattca 26877977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 28235782 - 28235818
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  28235782 tattaacttggatgttgtgagtttgttcgcagattca 28235818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 28541110 - 28541062
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    |||||| ||||||||||||||||||||| |||||| ||||||| |||||    
T  28541110 tttttcccctttctttcaatctaaataagtgattttcacatacatcaag 28541062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 43148922 - 43148958
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  43148922 tattaacttggatgttgtgagtttgttcgcagattca 43148958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 528
Target Start/End: Original strand, 27721679 - 27721726
Alignment:
Q  481 ttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||  ||||||| |||||||||||||| |||||||||||||||    
T  27721679 ttgaaccccagactttgcatatattatgcattgttcctaccaactgag 27721726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 5107238 - 5107296
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||| |||||   ||| ||| |||||||||||||||||| |||||||||||    
T  5107238 gtggtcggggttcgaacctcggaccttgcatatattatgcattattcataccaactgag 5107296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 6489075 - 6489017
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||| ||||||||||||||  ||| ||| |||||||||||||| | |||||||||||||    
T  6489075 gtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgag 6489017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 416
Target Start/End: Complemental strand, 8984889 - 8984855
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagatt 416  Q
    ||||||||||||||||||||||||||| |||||||    
T  8984889 tattaacttggatgttgtgagtttgttcgcagatt 8984855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 11720961 - 11720904
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||| |||||||||||||| |||| ||| |||||||||||||| | |||||||||||||    
T  11720961 gtggccggggtttgaaccc-cgaccttgcatatattatgcattgtccctaccaactgag 11720904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 13007413 - 13007455
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| || ||||||||||||||||||||||| ||||    
T  13007413 tattaacttgggtgctgtgagtttgtttgcagattcacccttt 13007455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 13864412 - 13864354
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||| |||||||||| ||| ||| |||||||||||    
T  13864412 gtggtcggggtttgaaccccggaccttgcatatattatgtattgttcataccaactgag 13864354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 416
Target Start/End: Complemental strand, 19280830 - 19280796
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagatt 416  Q
    ||||||||||||||||||||||||||| |||||||    
T  19280830 tattaacttggatgttgtgagtttgttcgcagatt 19280796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 24229688 - 24229646
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| || |||||||||||| |||||||||||||||    
T  24229688 tattaacttgggtgctgtgagtttgttcgcagattcactcttt 24229646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 25980341 - 25980383
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| || ||||||||||||||||||||||| ||||    
T  25980341 tattaacttgggtgatgtgagtttgtttgcagattcacccttt 25980383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 30298404 - 30298446
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||||||||||||| |||| ||||||||| |||||    
T  30298404 tattaacttggatgttgtgagtatgttcgcagattcattcttt 30298446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 31391657 - 31391615
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||    
T  31391657 tattaacttggatgttgtgagtttgttcgcaaattcacccttt 31391615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 34945577 - 34945619
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  34945577 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 34945619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 41214817 - 41214775
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccacatac 229  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||    
T  41214817 tttttctcatttctttcaatctgaataagtgatttccacatac 41214775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 528
Target Start/End: Complemental strand, 5846092 - 5846039
Alignment:
Q  475 cggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||  ||||||| |||||||||||||| | | |||||||||||    
T  5846092 cggggtttgaaccccagactttgcatatattatgcattgtccttaccaactgag 5846039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 528
Target Start/End: Complemental strand, 13044478 - 13044449
Alignment:
Q  499 atatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||||||||||||||    
T  13044478 atatattatgcattattcctaccaactgag 13044449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 528
Target Start/End: Complemental strand, 13114476 - 13114447
Alignment:
Q  499 atatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||||||||||||||    
T  13114476 atatattatgcattattcctaccaactgag 13114447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 14211411 - 14211448
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  14211411 tattaacttgggtgttgtgagtttgttcgcagattcac 14211448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 525
Target Start/End: Complemental strand, 22393930 - 22393882
Alignment:
Q  476 ggggtttgaaccctcgactttgaatatattatgcattattcctaccaact 525  Q
    ||||||||||||| |||||||| |||||| ||||||| ||||||||||||    
T  22393930 ggggtttgaaccc-cgactttgcatatataatgcattgttcctaccaact 22393882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 33412159 - 33412102
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactga 527  Q
    |||| ||||||||||| ||| ||| ||| |||||||||||||  ||||||||||||||    
T  33412159 gtggccggggtttgaatcctggaccttgcatatattatgcatctttcctaccaactga 33412102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 21290123 - 21289970
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| |||||||||||| | |||| |||||||||||||||| |||| |  || ||||||||||||| |||||| ||||||| | || ||||||||||||     
T  21290123 ttagtgagagaaactctgtcttctctctaagttttcttcctctttcactcatggaggagaggtgattttaggtcaatttttgacctagaatcacccctct 21290024  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
     | |  |||||| || ||||||||||| |||||| ||||||  |||||| |||||    
T  21290023 gcatcttttttc-cccttctttcaatccaaataagtgattttaacatacatcaag 21289970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 552240 - 552184
Alignment:
Q  472 ggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||| ||| ||| |||||||||||| ||| |||||||||||||    
T  552240 ggtcggggtttgaaccctggaccttgcatatattatgcaatatccctaccaactgag 552184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 234
Target Start/End: Original strand, 7546400 - 7546550
Alignment:
Q  86 gagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctc--gacg 183  Q
    |||||||| || || |||| ||||||||||||| || | || |  || |||||| |||||| |||||| ||||||| |||| ||||||||||||   |      
T  7546400 gagagaaattcaatcttctctctaagttttctttctctctcactcatcgaggaggggtgattttaggtcaatttttgatctagaatcacccctctgcatc 7546499  T
Q  184 taatttttctcctttctttcaatctaaataaatgatttccacatacgtcaa 234  Q
    |  |||||| || |||||||||||||||||| |||||| ||||||| ||||    
T  7546500 ttttttttcccccttctttcaatctaaataagtgattttcacatacatcaa 7546550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 4332657 - 4332718
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||| ||||||||||  ||| ||| ||||||||||||||||||  ||||||||||    
T  4332657 gtagtggtcggagtttgaaccccggaccttggatatattatgcattattcaaaccaactgag 4332718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 523
Target Start/End: Original strand, 29164746 - 29164799
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaa 523  Q
    |||||||||||||||||||  ||||||| ||||||||| ||||||||| |||||    
T  29164746 gtggtcggggtttgaaccccagactttgcatatattatacattattccaaccaa 29164799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 29921944 - 29921985
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccacata 228  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  29921944 tttttcccctttctttcaatctaaataagtgatttccacata 29921985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 29971097 - 29971138
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccacata 228  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  29971097 tttttcccctttctttcaatctaaataagtgatttccacata 29971138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 4019932 - 4019968
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||| |||||||||||||||||||||||||||||    
T  4019932 tattaacatggatgttgtgagtttgtttgcagattca 4019968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 4711666 - 4711702
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||| |||||||||||||||||||||||||    
T  4711666 tattaacttgggtgttgtgagtttgtttgcagattca 4711702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 30648603 - 30648567
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  30648603 tattaacttggatgttgtgagtttgttcgcagattca 30648567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 50194239 - 50194203
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  50194239 tattaacttggatgttgtgagtttgttcgcagattca 50194203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 528
Target Start/End: Original strand, 19139427 - 19139482
Alignment:
Q  473 gtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||  |||||  |||| ||||||||| |||||||||||||||    
T  19139427 gtcggggtttgaaccctgaactttacatatgttatgcattgttcctaccaactgag 19139482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 40487508 - 40487551
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||    
T  40487508 ttattaacttgggtgttgtgagtttgttcgcaaattcactcttt 40487551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 42460647 - 42460686
Alignment:
Q  196 tttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  42460647 tttctttcaatctaaataagtgatttccacatacatcaag 42460686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 2342636 - 2342674
Alignment:
Q  380 attattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  2342636 attattaacttggatgctgtgagtttgttcgcagattca 2342674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 6954600 - 6954558
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| || ||||||||||||||||||||||| ||||    
T  6954600 tattaacttgggtgctgtgagtttgtttgcagattcacccttt 6954558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 7464484 - 7464542
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||  |||||||||||||| | |||||||||||||    
T  7464484 gtggtcggggtttgaaccccggaccttacatatattatgcattgtccctaccaactgag 7464542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 34899165 - 34899107
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||| |||||||||||||| | ||||| |||||||    
T  34899165 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctacgaactgag 34899107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 44959877 - 44959835
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||    
T  44959877 tattaacttggatgctgtgagtttatttgcagattcacccttt 44959835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 416
Target Start/End: Complemental strand, 46979884 - 46979850
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagatt 416  Q
    |||||||||||||||| ||||||||||||||||||    
T  46979884 tattaacttggatgttatgagtttgtttgcagatt 46979850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 48315017 - 48315075
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||| |||||||||  ||| ||| |||||||||||||||| | |||||||||||    
T  48315017 gtggtcgggatttgaaccccggaccttgcatatattatgcattatccttaccaactgag 48315075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 48650638 - 48650596
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  48650638 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 48650596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 53508406 - 53508448
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||||||||||| |||||| |||||||||| ||||    
T  53508406 tattaacttggatgttgtgattttgttcgcagattcacccttt 53508448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 527
Target Start/End: Original strand, 759595 - 759644
Alignment:
Q  478 ggtttgaaccctcgactttgaatatattatgcattattcctaccaactga 527  Q
    ||||||||||||  |||||| |||||||||||||| | ||||||||||||    
T  759595 ggtttgaaccctgaactttgcatatattatgcattgtccctaccaactga 759644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 7546799 - 7546836
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| || |||||||||||||||||||||||    
T  7546799 tattaacttgggtgctgtgagtttgtttgcagattcac 7546836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 21628878 - 21628939
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||| ||||||||||  ||| ||| |||||||||||||||| |  ||||||||||    
T  21628878 gtagtggtcggagtttgaaccccggacgttggatatattatgcattatccaaaccaactgag 21628939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 25631411 - 25631374
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  25631411 ttattaacttggatgatgtgagtttgttcgcagattca 25631374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 35175290 - 35175331
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccacata 228  Q
    ||||||||||||| ||||||||||| || |||||||||||||    
T  35175290 tttttctcctttcattcaatctaaacaagtgatttccacata 35175331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 51303547 - 51303510
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  51303547 tattaacttgggtgttgtgagtttgttcgcagattcac 51303510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 52904141 - 52904194
Alignment:
Q  475 cggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||| |||| ||| |||||||||||||| | | |||||||||||    
T  52904141 cggggtttgaacccccgacattgcatatattatgcattgtccttaccaactgag 52904194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 221006 - 221064
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||||    
T  221006 gtggtcggggtttgaaccctagactttgcatatattatgtattatccctaccaactgag 221064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 18935592 - 18935745
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| |||||||||||| | |||| |||||||||||||||| ||||||  || |||||| |||||| | |||| ||||||| | || |||||| |||||     
T  18935592 ttagtgagagaaactctgtcttctctctaagttttcttcctctttcgctcatcgaggaggggtgatttaaggtcaatttttgacctagaatca-ccctct 18935690  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
     | |  |||||| ||||||||| ||||||||| | |||||| ||||||| |||||    
T  18935691 gcatcttttttcccctttcttttaatctaaattagtgattttcacatacatcaag 18935745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 21318246 - 21318304
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||| ||| ||| |||||||||||||| | |||||||||||||    
T  21318246 gtggtcggggtttgaaccctagaccttgcatatattatgcattgtccctaccaactgag 21318304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 27651753 - 27651907
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| |||||||| ||| | |||| ||||| |||||||||| |||| |  || |||||| |||||| |||||| ||||||| | || | ||||||| ||     
T  27651753 ttagtgagagaaattctgtcttctctctaaattttcttcctctttcactcatcgaggaggggtgatgttaggtcaatttttgacctaggatcacccatct 27651852  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
     | |  |||||| | ||||||||||||||||||| |||||| ||||||| |||||    
T  27651853 gcatcttttttcccatttctttcaatctaaataagtgattttcacatacatcaag 27651907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 35261397 - 35261433
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||||||||||||||||||||||||    
T  35261397 tattaacttggatgttgtgagtttgtttgcagattca 35261433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 8027390 - 8027448
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||| |||  ||| |||||||||||||||| | |||||||||||    
T  8027390 gtggtcggggtttgaacccccgatcttgcatatattatgcattatccttaccaactgag 8027448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 419
Target Start/End: Original strand, 18935986 - 18936024
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  18935986 ttattaacttgggtgttgtgagtttgtttgcagattcac 18936024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 35348512 - 35348554
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
T  35348512 tattaacttgggtgttgtgagtttgtttgcagattcacccttt 35348554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 9713819 - 9713860
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccacata 228  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  9713819 tttttcccctttctttcaatctaaataagtgatttccacata 9713860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 22063997 - 22063940
Alignment:
Q  168 gaatcacccctcgacgtaatttttctcctttctttcaatctaaataaatgatttccac 225  Q
    ||||||||||||  | || |||||||||||||||||||||||||||| || |||||||    
T  22063997 gaatcacccctctgcatattttttctcctttctttcaatctaaataagtgttttccac 22063940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 36194913 - 36194950
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36194913 tattaacttggatgttgtgagtttgttcgcagattcac 36194950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 44947616 - 44947653
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||||||||||||||| |||||||||    
T  44947616 ttattaacttggatgttgtgagtttgttcgcagattca 44947653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 1621414 - 1621378
Alignment:
Q  383 attaacttggatgttgtgagtttgtttgcagattcac 419  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1621414 attaacttggatgttgtgagtttgttcgcagattcac 1621378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 2069777 - 2069737
Alignment:
Q  186 atttttctcctttctttcaatctaaataaatgatttccaca 226  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  2069777 atttttctcctttttttcaatctaaataagtgatttccaca 2069737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 22301055 - 22301091
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  22301055 tattaacttggatgttgtgagtttgttcgcagattca 22301091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 29966531 - 29966567
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  29966531 tattaacttggatgttgtgagtttgttcgcagattca 29966567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 34024322 - 34024286
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  34024322 tattaacttggatgttgtgagtttgttcgcagattca 34024286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 36194624 - 36194672
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    |||||||||||||||||||| ||||||| |||||| ||||||| |||||    
T  36194624 tttttctcctttctttcaatttaaataagtgattttcacatacatcaag 36194672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 17949229 - 17949186
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||    
T  17949229 ttattaacttgggtgttgtgagtttgttcgcagattcacccttt 17949186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 17953081 - 17953038
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||    
T  17953081 ttattaacttgggtgttgtgagtttgttcgcagattcacccttt 17953038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 22164262 - 22164317
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaact 525  Q
    |||||||||||||||||||  ||| ||  |||||||||||||| ||||||||||||    
T  22164262 gtggtcggggtttgaaccccagaccttacatatattatgcattgttcctaccaact 22164317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 36161915 - 36161958
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||| |||||||||||||||  ||||||||||||||    
T  36161915 ttattaacttgggtgttgtgagtttgttcacagattcactcttt 36161958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 416
Target Start/End: Original strand, 43853647 - 43853682
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagatt 416  Q
    |||||||||||||||||||||||||||| |||||||    
T  43853647 ttattaacttggatgttgtgagtttgttcgcagatt 43853682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 46829740 - 46829783
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||| || |||||||||||||||||||||||||| |||||    
T  46829740 ttattaacatgaatgttgtgagtttgtttgcagattcattcttt 46829783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 2520984 - 2521026
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  2520984 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 2521026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 9643581 - 9643623
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||    
T  9643581 tattaacttgggtgttgtgagtttgtttgcaaatttactcttt 9643623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 11949756 - 11949814
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||  ||| ||| |||||||||||||| | | |||||||||||    
T  11949756 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgag 11949814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 19853416 - 19853374
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  19853416 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 19853374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 26633974 - 26633828
Alignment:
Q  81 ttagcgagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttttaatcttgaatcacccctcg 180  Q
    |||| ||||||||||| |  |||| |||||  |||||| ||| ||||   ||||||||| |||| |||||||| | ||||| | || |||||||||||      
T  26633974 ttagtgagagaaactccaacttctctctaaactttctttcttcttcgttcattgaggaggggtggtcttaggtcattttttgacctagaatcacccctat 26633875  T
Q  181 acgtaatttttctcctttctttcaatctaaataaatgatttccacat 227  Q
    || |  |||| ||| ||||||||||||||||||| || ||| |||||    
T  26633874 acatctttttcctcttttctttcaatctaaataagtggttttcacat 26633828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 48257536 - 48257494
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||    
T  48257536 tattaacttggattttgtgagtttgttcgcagattcacccttt 48257494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 478 - 528
Target Start/End: Original strand, 50362140 - 50362190
Alignment:
Q  478 ggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||| ||| ||| |||||||||||||| | |||||||||||||    
T  50362140 ggtttgaaccctggaccttgcatatattatgcattgtccctaccaactgag 50362190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 11299915 - 11299878
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  11299915 ttattaacttgggtgttgtgagtttgttcgcagattca 11299878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 21090346 - 21090383
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  21090346 ttattaacttggatagtgtgagtttgtttgcagattca 21090383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 45227926 - 45227889
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||||||||||||||| | |||||||    
T  45227926 ttattaacttggatgttgtgagtttgttcgtagattca 45227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 528
Target Start/End: Complemental strand, 55430635 - 55430606
Alignment:
Q  499 atatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||||||||||||||    
T  55430635 atatattatgcattattcctaccaactgag 55430606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 56172161 - 56172198
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  56172161 ttattaacatggatgttgtgagtttgttcgcagattca 56172198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 1529 - 1571
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  1529 tattaacttggatgttgtgagtttgtttgcagattcacccttt 1571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 527
Target Start/End: Original strand, 31336803 - 31336857
Alignment:
Q  473 gtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactga 527  Q
    ||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||    
T  31336803 gtcggggtttgaaccctagaccttgcatatattatgcattgttcctaccaactga 31336857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 8999884 - 8999943
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattc-ctaccaactgag 528  Q
    |||||||||||||||||||| ||||||| ||||||||||||||  || ||||||||||||    
T  8999884 gtggtcggggtttgaaccctggactttgcatatattatgcatttgtctctaccaactgag 8999943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 8412424 - 8412382
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
T  8412424 tattaacttgggtgttgtgagtttgtttgcagattcacccttt 8412382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 24099158 - 24099116
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  24099158 tattaacttggatgttgtgagtttgttcgcagattcacccttt 24099116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 34612004 - 34612046
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  34612004 tattaacttggatgttgtgagtttgttcgcagattcattcttt 34612046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 14544797 - 14544761
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14544797 tattaacttggatggtgtgagtttgtttgcagattca 14544761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 14585593 - 14585641
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccacatacgtcaag 235  Q
    |||||||| ||||||||||||||||||| |||||| ||||||| |||||    
T  14585593 tttttctcttttctttcaatctaaataagtgattttcacatacatcaag 14585641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 16794491 - 16794527
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  16794491 tattaacttggatgttgtgagtttgttcgcagattca 16794527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 44099820 - 44099784
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  44099820 tattaacttggatgttgtgagtttgttagcagattca 44099784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 15665875 - 15665910
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattc 417  Q
    ||||||| ||||||||||||||||||||||||||||    
T  15665875 tattaacatggatgttgtgagtttgtttgcagattc 15665910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 17693516 - 17693473
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||||||||||||||||| | | |||||||||||||    
T  17693516 ttattaacttggatgttgtgagtttggtcgtagattcactcttt 17693473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 3673628 - 3673670
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||    
T  3673628 tattaacttggatgctgtgagtttgtttgcagtttcacccttt 3673670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 16928659 - 16928617
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  16928659 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 16928617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 18638168 - 18638110
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||||||||||||||   |||||| |||| ||||||||| |||| ||||||||||    
T  18638168 gtggtcggggtttgaaccccatactttgcatattttatgcattgttccaaccaactgag 18638110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 30568223 - 30568181
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  30568223 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 30568181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Complemental strand, 31013510 - 31013468
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  31013510 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 31013468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 37971470 - 37971512
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||    
T  37971470 tattaacttgggtgttgtgagtttgttcgcagattcacccttt 37971512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 39655303 - 39655377
Alignment:
Q  86 gagagaaactctatattctttctaagttttcttcctttttcgcagattgaggagaggtgatcttaggttaatttt 160  Q
    |||||||||||||| |||| ||||||||||||| || |||| |  || ||||| ||||||| |||||| ||||||    
T  39655303 gagagaaactctatcttctctctaagttttctttctctttcacttatcgaggaaaggtgattttaggtcaatttt 39655377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 41625262 - 41625204
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||| |||||| ||||||| ||| ||  |||||||||||||||||| |||||||||||    
T  41625262 gtggttggggttcgaaccctagaccttacatatattatgcattattcataccaactgag 41625204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 523
Target Start/End: Complemental strand, 8881343 - 8881290
Alignment:
Q  470 gtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaa 523  Q
    |||| ||||||||||||||| ||| ||| |||||||||||||| | ||||||||    
T  8881343 gtggccggggtttgaaccctggaccttgcatatattatgcattgtccctaccaa 8881290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 9501917 - 9501954
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  9501917 ttattaacatggatgttgtgagtttgtttacagattca 9501954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 12243997 - 12243960
Alignment:
Q  381 ttattaacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  12243997 ttattaacatggatgttgtgagtttgttcgcagattca 12243960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 23230830 - 23230867
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  23230830 tattaacttgggtgttgtgagtttgttcgcagattcac 23230867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 24023405 - 24023466
Alignment:
Q  467 gtagtggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    ||||||||||||||||||||||  ||| ||| |||| ||||||||| |||| || |||||||    
T  24023405 gtagtggtcggggtttgaaccccggaccttgcatattttatgcattgttccaactaactgag 24023466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 37938562 - 37938505
Alignment:
Q  471 tggtcggggtttgaaccctcgactttgaatatattatgcattattcctaccaactgag 528  Q
    |||||||| ||||||||   ||||||| |||||||||||||||| | |||||||||||    
T  37938562 tggtcgggatttgaacctcggactttgcatatattatgcattatccataccaactgag 37938505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 41896704 - 41896741
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  41896704 tattaacttgggtgttgtgagtttgttcgcagattcac 41896741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 42046408 - 42046445
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  42046408 tattaacttgggtgttgtgagtttgttcgcagattcac 42046445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 43833898 - 43833861
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||| || |||||||||||||||||||||||    
T  43833898 tattaacttgggtgctgtgagtttgtttgcagattcac 43833861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 45445713 - 45445676
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  45445713 tattaacttggatgttgtgagtttgttcgcatattcac 45445676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 6215 - 6252
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcac 419  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6215 tattaacttggatgttgtgagtttgtttgcagattcac 6252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 5904 - 5943
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgatttccaca 226  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  5904 tttttctcctttctttcaatctaaataagtgatttccaca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 4402 - 4434
Alignment:
Q  386 aacttggatgttgtgagtttgtttgcagattca 418  Q
    |||||||||||||||||||||||||||||||||    
T  4402 aacttggatgttgtgagtttgtttgcagattca 4434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 83320 - 83284
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattca 418  Q
    ||||||||||||||||||||||||||| |||||||||    
T  83320 tattaacttggatgttgtgagtttgttcgcagattca 83284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 15677 - 15719
Alignment:
Q  382 tattaacttggatgttgtgagtttgtttgcagattcactcttt 424  Q
    ||||||||||| || |||||||||||| |||||||||||||||    
T  15677 tattaacttgggtgctgtgagtttgttcgcagattcactcttt 15719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 92991 - 93025
Alignment:
Q  187 tttttctcctttctttcaatctaaataaatgattt 221  Q
    |||||||||||||||||||||||||||| ||||||    
T  92991 tttttctcctttctttcaatctaaataagtgattt 93025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University