View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_12 (Length: 453)
Name: NF3913_low_12
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 38454238 - 38454664
Alignment:
| Q |
19 |
acatccccatttgaatagaatatctgattaaacctacagtttacaagaaacaatgaatcataatcataatacacggctgcagaatagaatgctaagaatg |
118 |
Q |
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| T |
38454238 |
acatccccatttgaatagaatatctgattaaacctacagtttacaagaaacaatgaatcataatcataatacacggctgcagaatagaatgctaagaatg |
38454337 |
T |
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| Q |
119 |
aatataacagaaccatgcatacatgcatgcatgcatgctgtggttttgaaataaaaaacaaaatggtacgtactatgctagattatgattctaagttcta |
218 |
Q |
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| T |
38454338 |
aatataacagaaccatgcatacatg----catgcatgcagtggttttgaaataaaaaacaaaatggtacgtactatcctagattatgattctaagttcta |
38454433 |
T |
|
| Q |
219 |
acaagcaagggaagagagaagtatgggaaacatatgcagataattaataaaaaccaaaatcaatataaaccatcgtatgatgcctctaccaacacagaag |
318 |
Q |
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| T |
38454434 |
acaagcaagggaagagagaagtatgggaaacatatgcagataattaataaaaaccaaaatcaatataaaccatcgtatgatgcctctaccaacacagaag |
38454533 |
T |
|
| Q |
319 |
agcattaattaaaataaataaataatagcaacgtttctac-nnnnnnnnggtacataacgttgctactttctaccaacacagaaaacaaactacagtaca |
417 |
Q |
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| T |
38454534 |
agcattaattaaaataaataaataatagcaacgttgctactttttttttggtacataacgttgctactttctaccaacagagaaaagaaactacagtaca |
38454633 |
T |
|
| Q |
418 |
gggtaaagtggtttgcgtttgcccctttgct |
448 |
Q |
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| T |
38454634 |
gagtaaagtggtttgcgtttaccccattgct |
38454664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 39848001 - 39847926
Alignment:
| Q |
17 |
aaacatccccatttgaatagaatatctgattaaacctacagtttacaagaaacaatg-aatcataatcataataca |
91 |
Q |
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| T |
39848001 |
aaacaccctcatctgaatacaacatctctttaaacctacagtttacaagaaacaatgaaatcataatcataataca |
39847926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 7047001 - 7047052
Alignment:
| Q |
24 |
cccatttgaatagaatatctgattaaacctacagtttacaagaaacaatgaa |
75 |
Q |
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| T |
7047001 |
cccatttgaatagatcatctctttaaacctacaatttacaagaaacaatgaa |
7047052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 182
Target Start/End: Complemental strand, 44473989 - 44473959
Alignment:
| Q |
152 |
catgctgtggttttgaaataaaaaacaaaat |
182 |
Q |
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| T |
44473989 |
catgctgtggttttgaaataaaaaacaaaat |
44473959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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