View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_19 (Length: 388)
Name: NF3913_low_19
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 378
Target Start/End: Complemental strand, 2430764 - 2430401
Alignment:
| Q |
21 |
gtacatgtacacatctaatacaactggccacatggtctgtacattcatctaacaaattgccaaatatgtaccttaatttaatttcaaggaacgatttagt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2430764 |
gtacatgtacacatctaatacaactggccacatggtctgtacattcatctaacaaattgccaaatatgtaccttaatttaatttcaaggaacgatttagt |
2430665 |
T |
|
| Q |
121 |
cttttatcttcnnnnnnnnn------cacattatttttgcccttttgatccatttgatatgaatattcaagttttaaatgtatgatttatttccttgtga |
214 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
2430664 |
cttttatcttttatcttcttttttttcacattatttttgcccttttgatccatttgatatgaatattcaacttttaaatctatgatttatttccttgtga |
2430565 |
T |
|
| Q |
215 |
cctctcagtctttagatttatggtctttcatccaagtttgcatatgaatctagatttggagcttgataattcatatgtcaattgtcaatggaccaaaatc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2430564 |
cctctcagtctttagatttatggtctttcatccaagtttgcatatgaatctagatttggagcttgataattcatatgtcaattgtcaatggaccaaaatc |
2430465 |
T |
|
| Q |
315 |
acgtgaacaaaatatagaagaccaaatacttatatgaagttaagttaaagaaccatgagtataa |
378 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2430464 |
acgtgaacaaaatataaaagaccaaatacttatatgaagttaagttaaagaaccatgagtataa |
2430401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 2434104 - 2434040
Alignment:
| Q |
315 |
acgtgaacaaaatatagaagaccaaatacttatatgaagttaagttaaagaaccatgagtataat |
379 |
Q |
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||||||| || ||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
2434104 |
acgtgaaaaacatataaaagaccaaatacttatctgaagttaagttaaagaaccacaagtataat |
2434040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 2434264 - 2434227
Alignment:
| Q |
93 |
ttaatttaatttcaaggaacgatttagtcttttatctt |
130 |
Q |
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| T |
2434264 |
ttaatttaatttcaagtaacgatttagttttttatctt |
2434227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 8358469 - 8358591
Alignment:
| Q |
171 |
atatgaatattcaagttttaaatgtatgatttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaatc-tagat |
269 |
Q |
| |
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|||||||| |||||| ||||| | ||||||| ||| ||| |||||||| | |||||| | ||| |||||||||| | ||||||||||||||| ||||| |
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| T |
8358469 |
atatgaattttcaagctttaattccatgattttttttcttatgacctcttaatctttaaacttacggtctttcatatatgtttgcatatgaatcttagat |
8358568 |
T |
|
| Q |
270 |
ttggagcttgataattcatatgt |
292 |
Q |
| |
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||| ||||||| ||||||||||| |
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| T |
8358569 |
ttgaagcttgaaaattcatatgt |
8358591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 288
Target Start/End: Complemental strand, 22399247 - 22399105
Alignment:
| Q |
149 |
ttttgcccttttgatccatttg-atatgaatattcaagttttaaatgtat-gatttatttccttgtgacctctcagtctttagatttatggtctttcatc |
246 |
Q |
| |
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|||||| |||||| | |||||| |||||||| |||||| || |||| ||| | |||| || || ||||||||||||| || | ||||||||||||||| | |
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| T |
22399247 |
ttttgctcttttggtacatttgcatatgaattttcaagcttcaaatatattgttttaatttctagtgacctctcagttttaaaatttatggtctttcacc |
22399148 |
T |
|
| Q |
247 |
caagtttgcatatgaatc-tagatttggagcttgataattcat |
288 |
Q |
| |
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| |||| ||| |||||| |||||||| ||||||| ||||||| |
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| T |
22399147 |
tatgtttacatttgaatcttagatttgaagcttgaaaattcat |
22399105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 474683 - 474775
Alignment:
| Q |
200 |
tttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaatc-tagatttggagcttgataattcatatg |
291 |
Q |
| |
|
||||||| | ||||| |||||||||| | || ||||||| |||| ||| ||||||||||||||| || ||||| ||||||| |||||||||| |
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|
| T |
474683 |
tttattttcctgtgagttctcagtcttcaaatctatggtccttcacccatgtttgcatatgaatcttaaatttgaagcttgaaaattcatatg |
474775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 291
Target Start/End: Complemental strand, 9253331 - 9253208
Alignment:
| Q |
171 |
atatgaatattcaagttttaaatgtatgatttatttc--cttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaatc-tag |
267 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| || || ||||||| |||| | || |||||||||||||| | |||| |||| |||| ||| |
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| T |
9253331 |
atatgaatattcaagctttaaatctatgattttttttttctcatggcctctcaatcttcaaatatatggtctttcatctatgttttgatataaatcttag |
9253232 |
T |
|
| Q |
268 |
atttggagcttgataattcatatg |
291 |
Q |
| |
|
||||| |||||| |||||||||| |
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| T |
9253231 |
atttgatgcttgaaaattcatatg |
9253208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 45682600 - 45682541
Alignment:
| Q |
233 |
tatggtctttcatccaagtttgcatatgaatc-tagatttggagcttgataattcatatg |
291 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||| ||||||| |||||||||| |
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| T |
45682600 |
tatggtctttcatccatgtttgcatatgaatcttatatttaaagcttgaaaattcatatg |
45682541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 41317018 - 41317110
Alignment:
| Q |
200 |
tttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaa-tctagatttggagcttgataattcatatg |
291 |
Q |
| |
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||||||| ||||||||||| || |||| | || ||||||||||||| || |||||| |||||| | ||||||| ||||||| ||| |||||| |
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| T |
41317018 |
tttattttcttgtgacctcccaatcttcaaatctatggtctttcattcatgtttgcctatgaattttagatttaaagcttgaaaatacatatg |
41317110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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