View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_2 (Length: 642)
Name: NF3913_low_2
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 12 - 624
Target Start/End: Original strand, 53675957 - 53676576
Alignment:
| Q |
12 |
aagcaaaggtggtgggcatgtatatcattttatcttgtcttgttatataagccaaaaatgaacctcctttttacaaaattttgtgcctttattattttta |
111 |
Q |
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| T |
53675957 |
aagcaaaggtggtgggcatgtatatcattttatcttgtcttgttatataagccaaaaatgaacctcctttttacaaaattttgtgcctttattattttta |
53676056 |
T |
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| Q |
112 |
gtttt---------acttccagttggtaggaaagcttgttggactatttgcaattcttgnnnnnnntagttacagtcatcactttatcatcaatgaaact |
202 |
Q |
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| T |
53676057 |
gtttttttttttttacttccagttggtaggaaagcttgttggactatttgcaattcttgaaaaaaatagttacattcatcactttatcatcaatgaaact |
53676156 |
T |
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| Q |
203 |
ttgagaggacactaactgttttctctttttctgatggatgataaagtggaaaatatttctgtctctaactaccaaaccttgcaaggttgccacatagcct |
302 |
Q |
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| T |
53676157 |
ttgagaggacactaactgttttctctttttctgatggatgataaagtggaaaatatttctgtctctaaat--caaaccttgcaaggttgccacatagcct |
53676254 |
T |
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| Q |
303 |
tcattatttttgacatacacaacagcattagaggttttattttgtgcaaggggactgtgaaggcgttatgtagaaataatattattgtccaattttaaag |
402 |
Q |
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| T |
53676255 |
tcattatttttgacatacacaacagcattagaggttttattttgtgcaaggggactgtgaaggcgttatgtagaaataatattattgtccaattttaaag |
53676354 |
T |
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| Q |
403 |
tttatcttttaacattttatttattttctcttcactgcgtgtttcttagcttctacaaagagggttaagtgtgacaaacaatattttaaaactaagttat |
502 |
Q |
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| T |
53676355 |
tttatcttttaacattttatttattttctcttgactgcgtgtttcttagcttctacaaagaggtttaagtgtcacaaacaatattttaaaactaagttat |
53676454 |
T |
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| Q |
503 |
ttgattcattgagtctctctgatataaagtttacaaattacaagtgatatttacagacaaatgtgtttgagcctaaatcctattagccatgatcatgacc |
602 |
Q |
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| T |
53676455 |
ttgattcattgagtctctctgatatatagtttacaaattacaagtgatatttacagacaaatgtgtttgagcctaaatcctattagccatgatcatgaca |
53676554 |
T |
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| Q |
603 |
tataaagatcgtgtcctaattg |
624 |
Q |
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| T |
53676555 |
tataaagatcgtgtcctaattg |
53676576 |
T |
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