View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3913_low_20 (Length: 383)

Name: NF3913_low_20
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3913_low_20
NF3913_low_20
[»] chr5 (2 HSPs)
chr5 (41-367)||(6228097-6228433)
chr5 (182-233)||(6229617-6229668)
[»] chr2 (3 HSPs)
chr2 (99-151)||(17980740-17980792)
chr2 (111-152)||(17984562-17984603)
chr2 (42-86)||(16568230-16568274)
[»] scaffold0009 (1 HSPs)
scaffold0009 (41-84)||(53670-53713)
[»] chr4 (3 HSPs)
chr4 (41-87)||(49574861-49574907)
chr4 (39-84)||(29306338-29306383)
chr4 (41-87)||(376190-376236)
[»] chr1 (3 HSPs)
chr1 (111-152)||(25380599-25380640)
chr1 (108-151)||(24592133-24592176)
chr1 (108-150)||(13332550-13332592)
[»] chr7 (4 HSPs)
chr7 (108-152)||(12153289-12153333)
chr7 (50-84)||(496908-496942)
chr7 (47-84)||(33744215-33744252)
chr7 (108-152)||(19019142-19019186)
[»] chr3 (2 HSPs)
chr3 (41-84)||(49758448-49758491)
chr3 (38-87)||(21078634-21078683)
[»] scaffold0830 (1 HSPs)
scaffold0830 (41-86)||(684-729)
[»] chr8 (1 HSPs)
chr8 (41-77)||(19341828-19341864)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 41 - 367
Target Start/End: Complemental strand, 6228433 - 6228097
Alignment:
Q  41 ttatagaaaaatttattttaagatataattgaaataatgaaaaaatacaacctaaaatcacattaaccacatttgaattcaatcaagtgtcaatttatca 140  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  6228433 ttatagaaaaatttgtttgaggatataattgaaataatgaaaaaatacgacctaaaatcatattaaccacatttgaattcaatctagtgtcaatttatca 6228334  T
Q  141 aacaca--------tataccataacataaatctattatc---ccatagacacacttactaactagcagccgacatcaactaataaataatgatgactaac 229  Q
    ||||||        |||||||||||||||||||||||||   ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6228333 aacacatatagtcatataccataacataaatctattatctatccatagacacatttactaactagcaaccgacatcaactaataaataatgatgactaac 6228234  T
Q  230 ctatnnnnnnnnntatcttgaacaagagattttaatcaaattggatggatcatggatatatcattgagtttgagttgaaatcnnnnnnnnnnnnnnnaag 329  Q
    ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  6228233 ctataaaaaaaaa-atcttgaacaagagattttaatcaaattggatggatcatggatatatcattgagtttgagttgaaatcttttttttcttttttaag 6228135  T
Q  330 ttaaaatcttaactacatacaataaatttctttgagag 367  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6228134 ttaaaatcttaactacatacaataaatttctttgagag 6228097  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 6229668 - 6229617
Alignment:
Q  182 acttactaactagcagccgacatcaactaataaataatgatgactaacctat 233  Q
    ||||||||| ||| | ||||||||||| |||||||||| |||||||||||||    
T  6229668 acttactaaatagtaaccgacatcaacgaataaataataatgactaacctat 6229617  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 17980740 - 17980792
Alignment:
Q  99 cacattaaccacatttgaattcaatcaagtgtcaatttatcaaacacatatac 151  Q
    |||||| | ||||||||||||||||  ||||||||||||||||||||||||||    
T  17980740 cacattgatcacatttgaattcaattgagtgtcaatttatcaaacacatatac 17980792  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 17984562 - 17984603
Alignment:
Q  111 atttgaattcaatcaagtgtcaatttatcaaacacatatacc 152  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  17984562 atttgaattcaatctagtgtcaatatatcaaacacatatacc 17984603  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 16568274 - 16568230
Alignment:
Q  42 tatagaaaaatttattttaagatataattgaaataatgaaaaaat 86  Q
    ||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  16568274 tatagaaaaatttatttaaaggtataattaaaataataaaaaaat 16568230  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 53713 - 53670
Alignment:
Q  41 ttatagaaaaatttattttaagatataattgaaataatgaaaaa 84  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  53713 ttatagaaaaatttgtttaaagatataattgaaataatgaaaaa 53670  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 49574907 - 49574861
Alignment:
Q  41 ttatagaaaaatttattttaagatataattgaaataatgaaaaaata 87  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  49574907 ttatagaaaaatttgtttaaagatataattgaaacaatgaaaaaata 49574861  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 29306338 - 29306383
Alignment:
Q  39 ttttatagaaaaatttattttaagatataattgaaataatgaaaaa 84  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||    
T  29306338 ttttatagaaaaatttgttcaaagatataattgaaataatgaaaaa 29306383  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 376236 - 376190
Alignment:
Q  41 ttatagaaaaatttattttaagatataattgaaataatgaaaaaata 87  Q
    ||||||||||| |||||| ||||||||||||  ||||||||||||||    
T  376236 ttatagaaaaaattatttaaagatataattgggataatgaaaaaata 376190  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 25380599 - 25380640
Alignment:
Q  111 atttgaattcaatcaagtgtcaatttatcaaacacatatacc 152  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  25380599 atttgaattcaatccaatgtcaatttatcaaacacatatacc 25380640  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 24592176 - 24592133
Alignment:
Q  108 cacatttgaattcaatcaagtgtcaatttatcaaacacatatac 151  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||    
T  24592176 cacatttggattcaatctagtgttaatttatcaaacacatatac 24592133  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 13332592 - 13332550
Alignment:
Q  108 cacatttgaattcaatcaagtgtcaatttatcaaacacatata 150  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||    
T  13332592 cacatttaaattcaatcaagtctcaattcatcaaacacatata 13332550  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 12153333 - 12153289
Alignment:
Q  108 cacatttgaattcaatcaagtgtcaatttatcaaacacatatacc 152  Q
    |||||||||||| |||| | |||||||||||||||||||||||||    
T  12153333 cacatttgaatttaatctattgtcaatttatcaaacacatatacc 12153289  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 496942 - 496908
Alignment:
Q  50 aatttattttaagatataattgaaataatgaaaaa 84  Q
    ||||||||| |||||||||||||||||||||||||    
T  496942 aatttatttaaagatataattgaaataatgaaaaa 496908  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 33744252 - 33744215
Alignment:
Q  47 aaaaatttattttaagatataattgaaataatgaaaaa 84  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  33744252 aaaaatttatttaaagatataattgcaataatgaaaaa 33744215  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 19019142 - 19019186
Alignment:
Q  108 cacatttgaattcaatcaagtgtcaatttatcaaacacatatacc 152  Q
    |||||||| |||||||| |||||||||||| ||||||| ||||||    
T  19019142 cacatttggattcaatctagtgtcaatttaccaaacacctatacc 19019186  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 49758448 - 49758491
Alignment:
Q  41 ttatagaaaaatttattttaagatataattgaaataatgaaaaa 84  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||    
T  49758448 ttatagaaaaatttgtttaaaggtataattgaaataatgaaaaa 49758491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 21078683 - 21078634
Alignment:
Q  38 tttttatagaaaaatttattttaagatataattgaaataatgaaaaaata 87  Q
    |||||||||||||| || ||| | | ||||||||||||||||||||||||    
T  21078683 tttttatagaaaaagttgtttaagggtataattgaaataatgaaaaaata 21078634  T

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Target: scaffold0830 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 729 - 684
Alignment:
Q  41 ttatagaaaaatttattttaagatataattgaaataatgaaaaaat 86  Q
    ||||||||||| | |||| ||||||||||||| |||||||||||||    
T  729 ttatagaaaaaataatttaaagatataattgagataatgaaaaaat 684  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 19341864 - 19341828
Alignment:
Q  41 ttatagaaaaatttattttaagatataattgaaataa 77  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  19341864 ttatagaaaaaattatttaaagatataattgaaataa 19341828  T

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