View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3913_low_23 (Length: 374)
Name: NF3913_low_23
Description: NF3913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3913_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 44809760 - 44809514
Alignment:
| Q |
9 |
gacatcatcaaccttgatgtcgcggtccaaatcgcagtactgtt-ctnnnnnnn-ccatgaactgaaaagacaaatttgcacaagcagatattacttata |
106 |
Q |
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| T |
44809760 |
gacatcatcaaccttgatgtcgcggtccaaatcgcagtactgtttctaaaaaaaaccatgaactgaaaagacaaatttgcacaagcagatattacttata |
44809661 |
T |
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| Q |
107 |
tcaacatcatgtgcttctgagaagtaatatcatacactgacctgtcaatgaatcaagcaaagtcacagaacttgtttcagcatacgttataattgctcat |
206 |
Q |
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| T |
44809660 |
tcaacatcatgtgcttctgagaagtaatatcatacactgacctgtcaatgaatcaagcaaagtcacagaacttgtttcagcatacattataattgctcat |
44809561 |
T |
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| Q |
207 |
aactcagttaataaggccaagagaacacacattgtgacattggtgag |
253 |
Q |
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| T |
44809560 |
aactcagttaataaggccaagagaacacacattgtgacattggtgag |
44809514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 44809455 - 44809409
Alignment:
| Q |
312 |
ttataagctttatgtttattgttatggttgaacaatgctaacaacac |
358 |
Q |
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| T |
44809455 |
ttataagctttatgtttattgttatggttgaacaatgctaacaacac |
44809409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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